Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   At1D1609_RS02710 Genome accession   NZ_CP026924
Coordinates   535248..535613 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain 1D1609     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 530248..540613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1609_RS02695 (At1D1609_05120) - 532462..532839 (-) 378 WP_065654481.1 hypothetical protein -
  At1D1609_RS02700 (At1D1609_05130) - 533408..534952 (+) 1545 WP_065654480.1 globin-coupled sensor protein -
  At1D1609_RS02705 (At1D1609_05140) - 534952..535251 (+) 300 WP_003503483.1 STAS domain-containing protein -
  At1D1609_RS02710 (At1D1609_05150) scnR 535248..535613 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  At1D1609_RS02715 (At1D1609_05160) - 535630..537897 (+) 2268 WP_065654479.1 chemotaxis protein CheA -
  At1D1609_RS02720 (At1D1609_05170) cheR 537911..538819 (+) 909 WP_003522764.1 protein-glutamate O-methyltransferase CheR -
  At1D1609_RS02725 (At1D1609_05180) cheB 538816..539871 (+) 1056 WP_065654478.1 protein-glutamate O-methylesterase CheB -
  At1D1609_RS02730 (At1D1609_05190) cheY2 539871..540260 (+) 390 WP_003503467.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=228769 At1D1609_RS02710 WP_003493773.1 535248..535613(+) (scnR) [Agrobacterium tumefaciens strain 1D1609]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=228769 At1D1609_RS02710 WP_003493773.1 535248..535613(+) (scnR) [Agrobacterium tumefaciens strain 1D1609]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCCGGACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAAACCATTCAGGCTGAAGACGGCATCGAGGGCCTCGAAGTGCTCGAGCAGAGCAACCCGGATGTTATCGTGACGGACA
TCAACATGCCCCGTCTCGATGGTTTCGGCTTCATCGAGGGTGTACGGCGCAACGAAAAGTATCGTGCGATCCCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACGGGCTGGATCGTCAAGCCGTT
CGACCCTGCGAAACTCATCGATGCCATTGAACGCGTAACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364

Multiple sequence alignment