Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   B9N48_RS05965 Genome accession   NZ_CP021169
Coordinates   1140429..1141382 (+) Length   317 a.a.
NCBI ID   WP_014476425.1    Uniprot ID   A0A0K6M9I2
Organism   Bacillus subtilis strain TLO3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135429..1146382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS05940 argF 1137259..1138218 (+) 960 WP_086343700.1 ornithine carbamoyltransferase -
  B9N48_RS05945 yjzC 1138304..1138483 (+) 180 WP_003245356.1 YjzC family protein -
  B9N48_RS05950 yjzD 1138530..1138715 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  B9N48_RS05955 - 1138966..1139700 (+) 735 WP_033883595.1 hypothetical protein -
  B9N48_RS05960 - 1139782..1140339 (+) 558 WP_038428783.1 hypothetical protein -
  B9N48_RS05965 med 1140429..1141382 (+) 954 WP_014476425.1 transcriptional regulator Med Regulator
  B9N48_RS05970 comZ 1141397..1141588 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  B9N48_RS05975 yjzB 1141618..1141854 (-) 237 WP_072173825.1 spore coat protein YjzB -
  B9N48_RS05980 fabH 1142019..1142957 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  B9N48_RS05985 fabF 1142980..1144221 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  B9N48_RS05990 yjaZ 1144297..1145082 (+) 786 WP_086343701.1 DUF2268 domain-containing protein -
  B9N48_RS05995 appD 1145274..1146260 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.84 Da        Isoelectric Point: 4.6031

>NTDB_id=228751 B9N48_RS05965 WP_014476425.1 1140429..1141382(+) (med) [Bacillus subtilis strain TLO3]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=228751 B9N48_RS05965 WP_014476425.1 1140429..1141382(+) (med) [Bacillus subtilis strain TLO3]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGATGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.685

100

0.997

Multiple sequence alignment