Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   B9N48_RS01950 Genome accession   NZ_CP021169
Coordinates   362263..362712 (-) Length   149 a.a.
NCBI ID   WP_124060108.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357263..367712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS01920 yckA 357415..358095 (-) 681 WP_086343438.1 amino acid ABC transporter permease -
  B9N48_RS01925 yckB 358105..358968 (-) 864 WP_086343439.1 transporter substrate-binding domain-containing protein -
  B9N48_RS20535 - 359130..359327 (+) 198 WP_144486850.1 hypothetical protein -
  B9N48_RS01930 yckC 359346..359801 (+) 456 WP_064672016.1 RDD family protein -
  B9N48_RS01935 yckD 359883..360215 (+) 333 WP_015252849.1 YckD family protein -
  B9N48_RS01940 bglC 360368..361801 (+) 1434 WP_086343440.1 6-phospho-beta-glucosidase -
  B9N48_RS01945 nin/comJ 361838..362236 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  B9N48_RS01950 nucA/comI 362263..362712 (-) 450 WP_124060108.1 DNA-entry nuclease Machinery gene
  B9N48_RS01955 tlpC 362880..364601 (-) 1722 WP_086343441.1 methyl-accepting chemotaxis protein TlpC -
  B9N48_RS01960 hxlB 364713..365270 (-) 558 WP_086343442.1 6-phospho-3-hexuloisomerase -
  B9N48_RS01965 hxlA 365276..365908 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  B9N48_RS01970 hxlR 366141..366503 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16456.39 Da        Isoelectric Point: 4.5282

>NTDB_id=228738 B9N48_RS01950 WP_124060108.1 362263..362712(-) (nucA/comI) [Bacillus subtilis strain TLO3]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETISFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=228738 B9N48_RS01950 WP_124060108.1 362263..362712(-) (nucA/comI) [Bacillus subtilis strain TLO3]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCTCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment