Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   B9N48_RS01945 Genome accession   NZ_CP021169
Coordinates   361838..362236 (-) Length   132 a.a.
NCBI ID   WP_015252845.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 356838..367236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS01920 yckA 357415..358095 (-) 681 WP_086343438.1 amino acid ABC transporter permease -
  B9N48_RS01925 yckB 358105..358968 (-) 864 WP_086343439.1 transporter substrate-binding domain-containing protein -
  B9N48_RS20535 - 359130..359327 (+) 198 WP_144486850.1 hypothetical protein -
  B9N48_RS01930 yckC 359346..359801 (+) 456 WP_064672016.1 RDD family protein -
  B9N48_RS01935 yckD 359883..360215 (+) 333 WP_015252849.1 YckD family protein -
  B9N48_RS01940 bglC 360368..361801 (+) 1434 WP_086343440.1 6-phospho-beta-glucosidase -
  B9N48_RS01945 nin/comJ 361838..362236 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  B9N48_RS01950 nucA/comI 362263..362712 (-) 450 WP_124060108.1 DNA-entry nuclease Machinery gene
  B9N48_RS01955 tlpC 362880..364601 (-) 1722 WP_086343441.1 methyl-accepting chemotaxis protein TlpC -
  B9N48_RS01960 hxlB 364713..365270 (-) 558 WP_086343442.1 6-phospho-3-hexuloisomerase -
  B9N48_RS01965 hxlA 365276..365908 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  B9N48_RS01970 hxlR 366141..366503 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.86 Da        Isoelectric Point: 4.7078

>NTDB_id=228737 B9N48_RS01945 WP_015252845.1 361838..362236(-) (nin/comJ) [Bacillus subtilis strain TLO3]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=228737 B9N48_RS01945 WP_015252845.1 361838..362236(-) (nin/comJ) [Bacillus subtilis strain TLO3]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985

Multiple sequence alignment