Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CAY59_RS26930 Genome accession   NZ_CP021146
Coordinates   2194792..2195973 (-) Length   393 a.a.
NCBI ID   WP_050914173.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189792..2200973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS26915 (CAY59_26635) - 2191096..2191644 (+) 549 WP_045403085.1 GNAT family N-acetyltransferase -
  CAY59_RS26920 (CAY59_26640) - 2191719..2192336 (-) 618 WP_050914172.1 HAD family phosphatase -
  CAY59_RS26925 (CAY59_26645) cqsS 2192640..2194685 (+) 2046 WP_045403299.1 hybrid sensor histidine kinase/response regulator Regulator
  CAY59_RS26930 (CAY59_26650) cqsA 2194792..2195973 (-) 1182 WP_050914173.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CAY59_RS26935 (CAY59_26655) ylqF 2196383..2197327 (-) 945 WP_038891693.1 ribosome biogenesis GTPase YlqF -
  CAY59_RS26940 (CAY59_26660) - 2197648..2198634 (-) 987 WP_086370694.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44072.08 Da        Isoelectric Point: 5.8447

>NTDB_id=228592 CAY59_RS26930 WP_050914173.1 2194792..2195973(-) (cqsA) [Vibrio campbellii strain LA16-V1]
MSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMS
AIFLQDDDSKPAFETQLAEYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNDMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRLEKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=228592 CAY59_RS26930 WP_050914173.1 2194792..2195973(-) (cqsA) [Vibrio campbellii strain LA16-V1]
ATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGA
GCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGACCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACT
TGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCGTGATGCTATCTACGAGCACGATGATAACGTCGTCATGTCT
GCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTGAAACGCAGCTCGCGGAGTATGTCGGTATGGGCAGTTGCCT
ATTATCCCAGTCCGGATGGGCAGCTAATATTGGCTTGTTACAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATT
TCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGCAGGAGCGCAAGCGCATCCATTCATGCATAACGACATGAAC
CATTTGCGCAAGCAGATACAGCGTCACGGCTCCGGCGTTATCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGC
ATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACTCACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAA
ACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAAAGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCAT
CTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTTGAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGC
GAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGGCCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAA
ATTGTGGCGTTAGAGTGCGGTAGTGAGCGAAATACGGAACGAGTGCGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGC
TGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATTATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACA
TTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.923

99.237

0.565

Multiple sequence alignment