Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CAY59_RS26925 Genome accession   NZ_CP021146
Coordinates   2192640..2194685 (+) Length   681 a.a.
NCBI ID   WP_045403299.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2187640..2199685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS26905 (CAY59_26625) dcuC 2187928..2189295 (-) 1368 WP_012129600.1 anaerobic C4-dicarboxylate transporter DcuC -
  CAY59_RS26910 (CAY59_26630) - 2189678..2190802 (-) 1125 WP_045369066.1 fatty acid desaturase -
  CAY59_RS26915 (CAY59_26635) - 2191096..2191644 (+) 549 WP_045403085.1 GNAT family N-acetyltransferase -
  CAY59_RS26920 (CAY59_26640) - 2191719..2192336 (-) 618 WP_050914172.1 HAD family phosphatase -
  CAY59_RS26925 (CAY59_26645) cqsS 2192640..2194685 (+) 2046 WP_045403299.1 hybrid sensor histidine kinase/response regulator Regulator
  CAY59_RS26930 (CAY59_26650) cqsA 2194792..2195973 (-) 1182 WP_050914173.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CAY59_RS26935 (CAY59_26655) ylqF 2196383..2197327 (-) 945 WP_038891693.1 ribosome biogenesis GTPase YlqF -
  CAY59_RS26940 (CAY59_26660) - 2197648..2198634 (-) 987 WP_086370694.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77839.68 Da        Isoelectric Point: 5.5065

>NTDB_id=228591 CAY59_RS26925 WP_045403299.1 2192640..2194685(+) (cqsS) [Vibrio campbellii strain LA16-V1]
MDAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFMFPQPYENLPLRILCSILFFGIIYRNRTPFEWRRFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFAQTFAGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=228591 CAY59_RS26925 WP_045403299.1 2192640..2194685(+) (cqsS) [Vibrio campbellii strain LA16-V1]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTACCCTCGTAGGATGGATGGGCTTCGTCGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCTTACGAAAACCTACCGCTTCGTATTCTCTGCTCAATCTTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTAGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTGCCTTGCTTCTTCTTTTACATGTTGTTGATGAACAACTGGTCGAATGTATGGGTGATGTCGTTTATGTCGGC
GATTTTTCTGCACATTCTGCTCGTGCATATCACATCGGTGATGTTTGCCCAGACATTTGCGGGAATTGGTCTGGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCATCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTATTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTTTCAATCGCAAAGTCTTTTGGGGCAGG
TATCGCCCACGAAATGCGAAACCCACTTAGTGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGACGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATCCATTCAGGAAACGAAACCATTGATTTGCTTCTTACCTCAATTGATGAGAACCGTGTTTCTCGCTCTACATTTAA
AAAGCACTCTGCACAATCTGTCGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAGCGATCGACAGACCGTTTTGCTATCT
CTTTGGATGTAAGAAGTGAATTCGATTTCTTGGGCAGCGATACATTACTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAGGATTTCCATATTCACGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCACCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ATTATGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGTGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGATATGGAG
AGTTTAGACGCCCGTGGCAGCCATATAGATAAGGTTGAATCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATCCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGATTCAACA
AACAAGCGAACCATTATGGTGGTTGACGATAATGAGTCTTTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAAGATGGGCTGCAAGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCTGTGATGGATGGTGTAGAAGCATCTCGTCAAATCAGAGGTTCAAATAAGGCGTACGCTTCGGTGCCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTGGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.029

100

0.483

Multiple sequence alignment