Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxQ   Type   Regulator
Locus tag   CAY59_RS19790 Genome accession   NZ_CP021146
Coordinates   628996..630345 (-) Length   449 a.a.
NCBI ID   WP_253820190.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 623996..635345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS19755 (CAY59_19515) - 624144..624812 (-) 669 WP_086370121.1 SH3 domain-containing protein -
  CAY59_RS19760 (CAY59_19520) - 624899..625468 (+) 570 WP_012129035.1 hypothetical protein -
  CAY59_RS29785 (CAY59_19525) - 625645..625875 (+) 231 WP_077201883.1 hypothetical protein -
  CAY59_RS19770 (CAY59_19530) - 625933..626548 (-) 616 Protein_547 class I SAM-dependent methyltransferase -
  CAY59_RS19775 (CAY59_19535) - 626595..627050 (-) 456 WP_041853553.1 Lrp/AsnC family transcriptional regulator -
  CAY59_RS19780 (CAY59_19540) - 627200..628127 (+) 928 Protein_549 DMT family transporter -
  CAY59_RS19785 (CAY59_19545) - 628221..628883 (+) 663 WP_005433315.1 PilZ domain-containing protein -
  CAY59_RS19790 (CAY59_19550) luxQ 628996..630345 (-) 1350 WP_253820190.1 ATP-binding protein Regulator
  CAY59_RS19795 (CAY59_19555) - 630371..632026 (-) 1656 Protein_552 LuxQ periplasmic sensor domain-containing protein -
  CAY59_RS19800 (CAY59_19560) luxP 632026..633123 (-) 1098 WP_038889042.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  CAY59_RS19805 (CAY59_19565) - 633522..633836 (-) 315 WP_005433435.1 GIY-YIG nuclease family protein -
  CAY59_RS19810 (CAY59_19570) - 633833..634486 (-) 654 WP_005433425.1 YceH family protein -
  CAY59_RS19815 (CAY59_19575) - 634580..634783 (-) 204 WP_005433391.1 hypothetical protein -
  CAY59_RS19820 (CAY59_19580) - 635022..635336 (+) 315 WP_005373603.1 DUF496 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50262.43 Da        Isoelectric Point: 4.8553

>NTDB_id=228586 CAY59_RS19790 WP_253820190.1 628996..630345(-) (luxQ) [Vibrio campbellii strain LA16-V1]
MTPHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNIARREAEKSAQARADFLAKM
SHEIRTPINGILGVAQLLKDSVDTQEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYR
PICTNKGVELVIENELDPNVEIFTDQVRLNQILFNLVSNAVKFTPTGSIRLHAELEQFYGAENSVLVVELTDTGIGIESD
KLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGVGTTFVITLPVKDRERVLRPLEVSQRIKPEAL
FDESLKVLLVEDNHTNAFILQAFCKKYKMQVDWAKDGLEAMELLSDTTYDLILMDNQLPHLGGIETTHEIRQNLRLGTPI
YACTADTAKETSDAFMAAGANYVMLKPIKENALHEAFVDFKQRFLVERT

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=228586 CAY59_RS19790 WP_253820190.1 628996..630345(-) (luxQ) [Vibrio campbellii strain LA16-V1]
TTGACCCCACACCTTAAAATGGCGGCTCAAGGTGCGACGCTGACTGGGGTGAACGTGCCTATTGGTAATAAGATCTACCG
ATGGAACTTGTCGCCAATTCGTGTTGATGGCGATATCAGTGGCATTATTGTGCAAGGCCAAGACATTACAACACTCATCG
AAGCCGAGAAGCAGAGTAACATTGCGCGTAGAGAAGCGGAAAAATCGGCGCAAGCGCGTGCAGACTTCCTTGCTAAAATG
AGCCATGAAATTCGTACGCCAATCAACGGCATTTTAGGTGTCGCACAATTATTGAAAGATTCTGTCGATACACAAGAGCA
GAAGAATCAAATCGACGTCCTGTGCCACAGTGGCGAGCACTTGCTTGCAGTACTGAACGATATTCTCGATTTCTCAAAGA
TAGAGCAGGGCAAGTTCAATATTCAGAAACACCCGTTCTCTTTCACCGATACCATGCGTACATTGGAAAATATTTATCGT
CCGATTTGCACAAATAAGGGGGTGGAGTTGGTCATCGAGAATGAGCTTGACCCGAATGTTGAAATCTTCACCGATCAAGT
CCGCTTGAATCAGATTCTATTTAACTTAGTGAGTAATGCCGTTAAGTTCACGCCGACTGGCTCGATTCGACTGCACGCGG
AACTGGAACAATTTTATGGTGCGGAGAACAGCGTGTTAGTTGTGGAACTGACTGATACTGGCATCGGCATTGAAAGCGAT
AAGCTCGACCAAATGTTCGAACCTTTTGTGCAAGAAGAGGCGACAACCACACGCGAATATGGCGGTAGCGGCCTAGGTTT
GACCATCGTTAAGAACCTAGTCGATATGTTAGAAGGTGATGTTCAGGTCCGCAGTAGCAAGGGAGTGGGAACAACATTTG
TTATAACACTTCCAGTAAAAGATCGTGAGCGTGTCTTAAGGCCTCTGGAGGTCAGTCAACGTATCAAGCCGGAAGCTTTG
TTTGATGAAAGTTTAAAAGTGCTACTGGTGGAAGATAACCATACCAATGCGTTTATCCTTCAGGCTTTCTGTAAGAAGTA
TAAAATGCAGGTGGATTGGGCGAAAGATGGGCTGGAAGCGATGGAGCTCCTCTCTGATACCACCTACGATCTGATCCTTA
TGGATAATCAATTGCCTCACCTTGGTGGTATTGAGACCACGCACGAGATTCGCCAGAACTTGAGGCTTGGAACGCCAATT
TACGCGTGTACAGCAGACACCGCGAAAGAAACCAGTGATGCGTTTATGGCGGCAGGTGCAAACTATGTCATGCTGAAGCC
AATTAAAGAGAATGCGTTACATGAGGCGTTTGTCGATTTCAAACAACGTTTCTTGGTAGAAAGAACCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(327-436)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(184-299)

His Kinase A (phospho-acceptor) domain (HisKA)

(73-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

55.43

98.441

0.546

Multiple sequence alignment