Detailed information NTG0228561

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CAY59_RS03570
• Genome accession: NZ_CP021145
• Coordinates: 711645..712631 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LA16-V1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 706645..717631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAY59_RS03535 (CAY59_03490)	ftsB	706651..706932 (+)	282	WP_005452106.1	cell division protein FtsB	-
CAY59_RS03540 (CAY59_03495)	ispD	706934..707644 (+)	711	WP_079400977.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CAY59_RS03545 (CAY59_03500)	ispF	707659..708135 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CAY59_RS03550 (CAY59_03505)	truD	708181..709224 (+)	1044	WP_086368978.1	tRNA pseudouridine(13) synthase TruD	-
CAY59_RS03555 (CAY59_03510)	surE	709224..710000 (+)	777	WP_080765350.1	5'/3'-nucleotidase SurE	-
CAY59_RS03560 (CAY59_03515)	-	710000..710626 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CAY59_RS03565 (CAY59_03520)	-	710641..711564 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
CAY59_RS03570 (CAY59_03525)	rpoS	711645..712631 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
CAY59_RS03575 (CAY59_03530)	mutS	712720..715281 (-)	2562	WP_077200202.1	DNA mismatch repair protein MutS	-
CAY59_RS03580 (CAY59_03535)	pncC	715367..715849 (+)	483	WP_045395379.1	nicotinamide-nucleotide amidase	-
CAY59_RS03585 (CAY59_03540)	recA	716050..717093 (+)	1044	WP_005425359.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=228561 CAY59_RS03570 WP_005425361.1 711645..712631(+) (rpoS) [Vibrio campbellii strain LA16-V1]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=228561 CAY59_RS03570 WP_005425361.1 711645..712631(+) (rpoS) [Vibrio campbellii strain LA16-V1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857