Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AM456_RS14655 Genome accession   NZ_CP026755
Coordinates   2713713..2714450 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AR_0077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2708713..2719450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM456_RS14640 (AM456_14660) clpC 2709167..2711740 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  AM456_RS14645 (AM456_14665) yfiH 2711870..2712601 (-) 732 WP_000040147.1 purine nucleoside phosphorylase YfiH -
  AM456_RS14650 (AM456_14670) rluD 2712598..2713578 (-) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AM456_RS14655 (AM456_14675) comL 2713713..2714450 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AM456_RS14660 (AM456_14680) - 2714553..2715899 (+) 1347 WP_172837118.1 IS4-like element IS4 family transposase -
  AM456_RS14670 (AM456_14690) raiA 2716159..2716500 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AM456_RS14675 (AM456_14695) pheL 2716604..2716651 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AM456_RS14680 (AM456_14700) pheA 2716750..2717910 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  AM456_RS14685 (AM456_14705) tyrA 2717953..2719074 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=228554 AM456_RS14655 WP_000197686.1 2713713..2714450(+) (comL) [Escherichia coli strain AR_0077]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=228554 AM456_RS14655 WP_000197686.1 2713713..2714450(+) (comL) [Escherichia coli strain AR_0077]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment