Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | B9N98_RS05480 | Genome accession | NZ_CP021136 |
| Coordinates | 1063784..1064362 (+) | Length | 192 a.a. |
| NCBI ID | WP_003616385.1 | Uniprot ID | A0A2I1SID3 |
| Organism | Lactobacillus delbrueckii subsp. delbrueckii strain TUA4408L | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1058784..1069362
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9N98_RS05465 (B9N98_05480) | gyrB | 1058789..1060750 (+) | 1962 | WP_002879426.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| B9N98_RS05470 (B9N98_05485) | gyrA | 1060763..1063234 (+) | 2472 | WP_002879428.1 | DNA gyrase subunit A | - |
| B9N98_RS05475 (B9N98_05490) | rpsF | 1063450..1063743 (+) | 294 | WP_072546823.1 | 30S ribosomal protein S6 | - |
| B9N98_RS05480 (B9N98_05495) | ssb | 1063784..1064362 (+) | 579 | WP_003616385.1 | single-stranded DNA-binding protein | Machinery gene |
| B9N98_RS05485 (B9N98_05500) | rpsR | 1064389..1064625 (+) | 237 | WP_002879432.1 | 30S ribosomal protein S18 | - |
| B9N98_RS05490 (B9N98_05505) | - | 1064766..1066787 (+) | 2022 | WP_002879433.1 | DHH family phosphoesterase | - |
| B9N98_RS05495 (B9N98_05510) | rplI | 1066810..1067265 (+) | 456 | WP_013438865.1 | 50S ribosomal protein L9 | - |
| B9N98_RS05500 (B9N98_05515) | dnaB | 1067289..1068659 (+) | 1371 | WP_086355970.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 20667.31 Da Isoelectric Point: 4.5431
>NTDB_id=228485 B9N98_RS05480 WP_003616385.1 1063784..1064362(+) (ssb) [Lactobacillus delbrueckii subsp. delbrueckii strain TUA4408L]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
Nucleotide
Download Length: 579 bp
>NTDB_id=228485 B9N98_RS05480 WP_003616385.1 1063784..1064362(+) (ssb) [Lactobacillus delbrueckii subsp. delbrueckii strain TUA4408L]
ATGATCAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACTAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
ATGATCAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACTAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.031 |
100 |
0.583 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.396 |
100 |
0.474 |