Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C4J65_RS23965 Genome accession   NZ_CP026730
Coordinates   5107085..5107726 (-) Length   213 a.a.
NCBI ID   WP_115744237.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5102085..5112726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS23945 (C4J65_23910) atpD 5102474..5103910 (+) 1437 WP_115744234.1 F0F1 ATP synthase subunit beta -
  C4J65_RS23950 (C4J65_23915) - 5104042..5104416 (+) 375 WP_115744235.1 F0F1 ATP synthase subunit epsilon -
  C4J65_RS23955 (C4J65_23920) - 5104559..5105008 (+) 450 WP_003973622.1 DUF2550 domain-containing protein -
  C4J65_RS23960 (C4J65_23925) - 5105072..5106937 (-) 1866 WP_115744236.1 glycoside hydrolase family 18 chitinase -
  C4J65_RS23965 (C4J65_23930) vraR 5107085..5107726 (-) 642 WP_115744237.1 response regulator transcription factor Regulator
  C4J65_RS23970 (C4J65_23935) - 5107723..5108919 (-) 1197 WP_115744238.1 histidine kinase -
  C4J65_RS23975 (C4J65_23940) - 5109072..5109731 (+) 660 WP_115744239.1 hypothetical protein -
  C4J65_RS23980 (C4J65_23945) - 5109728..5110300 (-) 573 WP_054098995.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  C4J65_RS23985 (C4J65_23950) - 5110538..5111287 (-) 750 WP_115744240.1 ABC transporter permease -
  C4J65_RS23990 (C4J65_23955) - 5111308..5112090 (-) 783 WP_115744241.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22479.06 Da        Isoelectric Point: 4.7252

>NTDB_id=228417 C4J65_RS23965 WP_115744237.1 5107085..5107726(-) (vraR) [Streptomyces sp. CB09001]
MIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGERAVALARELRPDLVLMDVQMPRLDGVSATRIVVGEQLADVLVL
TTFDLDEYVFGALRAGAAGFLLKNTDAKDLIAAVRTVAGGEGIVAPAVTRRLIAEFAANPVREPAADPAVLRELTRRERE
VLSCLGEGLSNAAVAERLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI

Nucleotide


Download         Length: 642 bp        

>NTDB_id=228417 C4J65_RS23965 WP_115744237.1 5107085..5107726(-) (vraR) [Streptomyces sp. CB09001]
ATGATCCGCGTCCTCGTCGCCGAGGACCAGTCCGCCGTCCGCGCGGGGCTGGTGCTGATCCTGGGCAGCGCACCGGACAT
CGAGGTGGTGGGCGAGGCCGCGGACGGGGAGCGGGCGGTGGCGCTGGCCCGGGAGCTGCGTCCCGACCTGGTGCTGATGG
ACGTGCAGATGCCGCGCCTGGACGGGGTGTCGGCGACCCGGATCGTGGTCGGGGAGCAACTCGCCGACGTCCTGGTGCTG
ACCACCTTCGACCTGGACGAGTACGTCTTCGGGGCGCTGCGGGCGGGAGCCGCCGGGTTCCTGCTGAAGAACACCGACGC
CAAGGACCTGATCGCGGCCGTGCGCACGGTGGCGGGCGGCGAGGGCATCGTGGCCCCGGCCGTCACCCGGCGGCTGATCG
CCGAGTTCGCCGCGAACCCGGTGCGCGAGCCGGCCGCGGACCCGGCCGTGCTGCGGGAGCTGACGCGGCGTGAGCGCGAG
GTGCTCTCGTGTCTCGGCGAGGGGCTGTCCAACGCGGCGGTCGCCGAGCGCCTCGACATGGCGGAGGCCACGGTGAAGAC
ACACGTCAGCCGACTGCTGGGGAAGTTGGGGCTGCGCAGCCGGGTGCAAGCGGCGGTGCTGGCGCAGGAGTTGGGGATCT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.429

98.592

0.408
  degU Bacillus subtilis subsp. subtilis str. 168

39.013

100

0.408