Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C4J65_RS15650 Genome accession   NZ_CP026730
Coordinates   3407866..3408543 (-) Length   225 a.a.
NCBI ID   WP_115742951.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3402866..3413543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS15640 (C4J65_15620) - 3404353..3406866 (-) 2514 WP_115742950.1 ABC transporter permease -
  C4J65_RS15645 (C4J65_15625) - 3406863..3407705 (-) 843 WP_162833199.1 ABC transporter ATP-binding protein -
  C4J65_RS15650 (C4J65_15630) vraR 3407866..3408543 (-) 678 WP_115742951.1 response regulator transcription factor Regulator
  C4J65_RS15655 (C4J65_15635) - 3408540..3409841 (-) 1302 WP_205351018.1 histidine kinase -
  C4J65_RS15660 (C4J65_15640) - 3409923..3410975 (-) 1053 WP_115742953.1 acyl-CoA desaturase -
  C4J65_RS15665 (C4J65_15645) - 3411075..3412286 (-) 1212 WP_115742954.1 acyltransferase -
  C4J65_RS15670 (C4J65_15650) - 3412283..3413260 (-) 978 WP_115742955.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24198.92 Da        Isoelectric Point: 6.7393

>NTDB_id=228405 C4J65_RS15650 WP_115742951.1 3407866..3408543(-) (vraR) [Streptomyces sp. CB09001]
MTTRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLSPPPGVTHR
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPAASRGKPALRLKG
LTERETEVLTLVARGQSNTEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGE

Nucleotide


Download         Length: 678 bp        

>NTDB_id=228405 C4J65_RS15650 WP_115742951.1 3407866..3408543(-) (vraR) [Streptomyces sp. CB09001]
GTGACGACGCGCGTCATCATCGTCGACGACCAGGCCATGGTGCGGGCCGGCTTCGCCGCGCTGCTGGCCGCCCAGAGCGA
CATCGACGTGGTGGGCGAGGCTCCCGACGGCGCGCAGGGCGTCGAGCTGAGCCGCCGTACGCATCCGGACGTCGTCCTCA
TGGACGTGCGGATGCCCGAGATGGACGGGCTGGAGGCCGCGCGCCGGCTGCTGTCGCCCCCGCCCGGGGTGACCCACCGG
CCGCGGGTGCTGATGCTCACCACGTTCGACGTCGACGACTACGTGTACGAGGCGCTGCGGGCGGGCGCCAGCGGCTTCCT
GCTGAAGGACGCGCCGCCGGCCGACCTCATCGCGGCGGTCCGCGTCGTGGCCTCGGGCGACGCGCTGCTCGCACCCTCCG
TGACGCGCCGCCTGATCGCGGACTTCGCCAAGCAGCGCCCCGCTGCTTCACGGGGCAAGCCCGCGCTGCGGCTCAAGGGC
CTGACGGAACGCGAGACCGAGGTCCTCACCCTGGTCGCCCGCGGCCAGTCGAACACGGAGATCGCCCGCACCCTGGTGCT
GGCCGAGCAGACGGTCAAGACCCACGTCAGCCGCGTCCTCACCAAGCTCGACCTGCGCGACCGCGCCCAGGCGGTGGTCT
TCGCGTACGAGTCGGGGCTCGTGGCCCCGGGAGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(161-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.724

98.222

0.4
  degU Bacillus subtilis subsp. subtilis str. 168

38.865

100

0.396