Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CAH07_RS09120 Genome accession   NZ_CP021123
Coordinates   1723193..1723996 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718193..1728996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS09100 (CAH07_08985) yqxC 1718303..1719148 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  CAH07_RS09105 (CAH07_08990) argR 1719246..1719695 (+) 450 WP_003230265.1 arginine repressor ArgR -
  CAH07_RS09110 (CAH07_08995) recN 1719732..1721462 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  CAH07_RS09115 (CAH07_09000) spoIVB 1721637..1722917 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  CAH07_RS09120 (CAH07_09005) spo0A 1723193..1723996 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  CAH07_RS09125 (CAH07_09010) yqiG 1724461..1725579 (-) 1119 WP_032730375.1 NADH-dependent flavin oxidoreductase -
  CAH07_RS09130 - 1725652..1725804 (-) 153 WP_014480226.1 hypothetical protein -
  CAH07_RS09135 (CAH07_09015) - 1726112..1726408 (+) 297 WP_014480225.1 hypothetical protein -
  CAH07_RS09140 (CAH07_09020) yqiI 1726428..1727048 (+) 621 WP_080276607.1 N-acetylmuramoyl-L-alanine amidase -
  CAH07_RS09145 (CAH07_09025) glpQB 1727127..1727858 (+) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=228396 CAH07_RS09120 WP_003226427.1 1723193..1723996(+) (spo0A) [Bacillus subtilis strain SEM-9]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=228396 CAH07_RS09120 WP_003226427.1 1723193..1723996(+) (spo0A) [Bacillus subtilis strain SEM-9]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment