Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   C4J65_RS13990 Genome accession   NZ_CP026730
Coordinates   3079264..3080673 (+) Length   469 a.a.
NCBI ID   WP_115742722.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3074264..3085673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS13975 (C4J65_13960) - 3074974..3075906 (-) 933 WP_115742719.1 Ppx/GppA phosphatase family protein -
  C4J65_RS13980 (C4J65_13965) - 3076002..3076826 (+) 825 WP_115742720.1 hypothetical protein -
  C4J65_RS13985 (C4J65_13970) - 3077005..3078771 (-) 1767 WP_115742721.1 sigma-70 family RNA polymerase sigma factor -
  C4J65_RS13990 (C4J65_13975) radA/sms 3079264..3080673 (+) 1410 WP_115742722.1 DNA repair protein RadA Machinery gene
  C4J65_RS13995 (C4J65_13980) disA 3080755..3081879 (+) 1125 WP_003975482.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  C4J65_RS36055 - 3081916..3082758 (-) 843 WP_162833182.1 hypothetical protein -
  C4J65_RS14010 (C4J65_13995) - 3082945..3083871 (+) 927 WP_115742725.1 A/G-specific adenine glycosylase -
  C4J65_RS14015 (C4J65_14000) - 3084161..3084694 (+) 534 WP_003975479.1 SigE family RNA polymerase sigma factor -
  C4J65_RS14020 (C4J65_14005) - 3084682..3085359 (+) 678 WP_205351008.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49838.87 Da        Isoelectric Point: 7.4878

>NTDB_id=228395 C4J65_RS13990 WP_115742722.1 3079264..3080673(+) (radA/sms) [Streptomyces sp. CB09001]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGRVPDGMKVLEVADMGDALRVLPRSRRREATREEDDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=228395 C4J65_RS13990 WP_115742722.1 3079264..3080673(+) (radA/sms) [Streptomyces sp. CB09001]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGTACGACCACCCCGGGGC
GCGTGACCACGTCCGCGGTGCCGATCGGCCAGGTCGACGGGCGTCAGGCGACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGGGCGGTGGTGCTCGTCGCGGGTGAGCCGGGCGTCGGGAAGTCCACCCT
GCTCCTTGACGTGGCGGCCAAGTCCGCGAGCGAGGAGCACCGGACGCTCTATGTCACCGGTGAGGAGTCCGCCAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCATCTGTATCTCGCCGCCGAGACCGACCTCGCGGCGGTGCTC
GGGCACCTCGACGCCGTGAAGCCGTCGCTGCTGATCCTGGACTCCGTGCAGACGGTGGCCTCGCCCGAGATCGACGGTGC
CCCGGGTGGCATGGCGCAGGTGCGGGAGGTGGCGGGGGCGCTGATCCGTGCCTCCAAGGAGCGCGGCATGTCGACGCTCC
TTGTGGGCCATGTCACCAAGGACGGGGCCATCGCCGGGCCACGGCTGCTTGAGCACCTCGTCGACGTCGTACTGCACTTC
GAGGGTGACCGGCATGCGCGGCTGAGGCTGGTGCGGGGGGTCAAGAACCGGTACGGGACGACCGATGAAGTCGGCTGCTT
CGAGTTGCACGACGAAGGGATCACGGGGCTTGCCGATCCCAGCGGGCTCTTTCTCACGCGGCGGGCCGAGCCCGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAGGGGCGCCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATT
CCCTCGCCCCGGCGTACGACCTCCGGGCTCGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGGCG
CATCAGTGCGCTGGGGAAGAGGGACATCTACAGTGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCGGCCGCAGACCTCG
CCGTCGCGCTGGCGTTGGCGAGTGCGGCCAGTGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGGCTC
GCGGGAGAGGTGAGACGGGTCACGGGGGTGCAGCGCAGGCTCTCCGAAGCTCATCGGCTGGGCTTCACGCACGCCCTGGT
GCCGGCCGATCCGGGCAGGGTCCCTGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGAGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCACACGGGAGGAGGACGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403
  radA Streptococcus mitis SK321

44.366

90.832

0.403

Multiple sequence alignment