Detailed information NTG0228360

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CAH07_RS01980
• Genome accession: NZ_CP021123
• Coordinates: 387482..388627 (-)
• Length: 381 a.a.
• NCBI ID: WP_029318693.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SEM-9
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 382482..393627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAH07_RS01945 (CAH07_01915)	-	383051..383614 (-)	564	WP_015483840.1	hypothetical protein	-
CAH07_RS01950 (CAH07_01920)	-	383607..384254 (-)	648	WP_029318689.1	ABC transporter ATP-binding protein	-
CAH07_RS01965 (CAH07_01935)	-	385730..386416 (-)	687	WP_241495663.1	hypothetical protein	-
CAH07_RS01970 (CAH07_01940)	-	386676..387152 (-)	477	WP_015384936.1	hypothetical protein	-
CAH07_RS01975 (CAH07_01945)	phrF	387379..387498 (-)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
CAH07_RS01980 (CAH07_01950)	rapF	387482..388627 (-)	1146	WP_029318693.1	response regulator aspartate phosphatase RapF	Regulator
CAH07_RS01990 (CAH07_01960)	ywhK	388857..390212 (+)	1356	WP_015250986.1	YncE family protein	-
CAH07_RS01995 (CAH07_01965)	ywhL	390251..391627 (+)	1377	WP_101172255.1	YncE family protein	-
CAH07_RS02000 (CAH07_01970)	albG	391633..392334 (-)	702	WP_029318695.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
CAH07_RS02005 (CAH07_01975)	albF	392331..393611 (-)	1281	WP_029318696.1	pitrilysin family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45594.05 Da
• Isoelectric Point: 5.0624

>NTDB_id=228360 CAH07_RS01980 WP_029318693.1 387482..388627(-) (rapF) [Bacillus subtilis strain SEM-9]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=228360 CAH07_RS01980 WP_029318693.1 387482..388627(-) (rapF) [Bacillus subtilis strain SEM-9]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.95	100	0.99
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572