Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CAL13_RS06660 Genome accession   NZ_CP021109
Coordinates   1443766..1444530 (-) Length   254 a.a.
NCBI ID   WP_232462593.1    Uniprot ID   -
Organism   Bordetella genomosp. 9 strain AU17164     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1438766..1449530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL13_RS06650 (CAL13_06650) tex 1438904..1441297 (-) 2394 WP_086073543.1 RNA-binding transcriptional accessory protein Tex -
  CAL13_RS06655 (CAL13_06655) - 1441458..1443653 (+) 2196 WP_086073544.1 ATP-dependent DNA helicase -
  CAL13_RS06660 (CAL13_06660) comL 1443766..1444530 (-) 765 WP_232462593.1 outer membrane protein assembly factor BamD Machinery gene
  CAL13_RS06665 (CAL13_06665) - 1444668..1445627 (+) 960 WP_086056707.1 RluA family pseudouridine synthase -
  CAL13_RS06670 (CAL13_06670) pgeF 1445624..1446409 (+) 786 WP_086071883.1 peptidoglycan editing factor PgeF -
  CAL13_RS06675 (CAL13_06675) phaC 1446570..1448210 (+) 1641 WP_086071884.1 class I poly(R)-hydroxyalkanoic acid synthase -
  CAL13_RS06680 (CAL13_06680) phbB 1448292..1449029 (+) 738 WP_086056710.1 acetoacetyl-CoA reductase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28879.41 Da        Isoelectric Point: 5.4107

>NTDB_id=228279 CAL13_RS06660 WP_232462593.1 1443766..1444530(-) (comL) [Bordetella genomosp. 9 strain AU17164]
MLLAACASSGTKVDKTAGWSAEQLYNDGKQEMDAGNWKDARDRMTAVESRYPFGIYAQQALMNLAYINWKDGENEQALAA
IDRFQQLYPNHPGTDYMLYLKGLINFTPASAFMTNLTGQDPSERDPKGLRASYDAFNELIKRYPDSKYAADAKLRVVWLV
NAIAGNEVHVARYYYERGAYVAAANRAQTVITDFQGAPATEEALYILYKSYEKLNMPQLEKDAKRVLDANFPNSKYPTQG
FAQDKNWWDPWSWL

Nucleotide


Download         Length: 765 bp        

>NTDB_id=228279 CAL13_RS06660 WP_232462593.1 1443766..1444530(-) (comL) [Bordetella genomosp. 9 strain AU17164]
GTGCTGCTCGCCGCCTGCGCGTCCAGCGGCACCAAGGTCGATAAGACCGCCGGCTGGAGCGCCGAACAGCTTTACAACGA
CGGCAAGCAGGAAATGGACGCCGGCAACTGGAAAGACGCCCGCGACCGCATGACGGCCGTCGAAAGCCGCTACCCGTTCG
GCATCTACGCGCAGCAGGCGCTGATGAACCTGGCGTACATCAACTGGAAGGACGGCGAGAATGAGCAGGCCCTGGCCGCC
ATCGACCGCTTCCAGCAGCTGTATCCCAACCACCCCGGCACGGACTACATGCTTTACCTGAAGGGTTTGATCAATTTCAC
GCCCGCCAGCGCATTCATGACCAATCTCACCGGCCAGGATCCCAGCGAACGGGATCCCAAGGGCCTGCGGGCGTCGTATG
ACGCCTTCAACGAGCTGATCAAGCGCTACCCGGACAGCAAGTACGCGGCGGATGCCAAGCTGCGCGTGGTCTGGCTGGTC
AACGCGATTGCCGGCAACGAAGTCCACGTGGCGCGCTATTACTACGAACGCGGCGCCTACGTGGCGGCGGCCAACCGGGC
GCAAACGGTGATCACGGATTTCCAGGGTGCCCCGGCGACCGAGGAAGCGCTGTACATCCTGTACAAGTCCTACGAAAAGC
TGAACATGCCTCAGCTGGAAAAGGACGCGAAGCGGGTGCTGGACGCCAATTTCCCGAACAGCAAGTACCCCACCCAGGGT
TTCGCGCAGGACAAGAACTGGTGGGACCCCTGGAGCTGGCTGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(21-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.047

100

0.484
  comL Neisseria gonorrhoeae MS11

46.875

100

0.472

Multiple sequence alignment