Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   B4893_RS07635 Genome accession   NZ_CP021105
Coordinates   1533837..1534283 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528837..1539283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4893_RS07605 (B4893_07520) gcvPA 1529763..1531109 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  B4893_RS07610 (B4893_07525) gcvT 1531129..1532220 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  B4893_RS07615 (B4893_07530) - 1532379..1532903 (-) 525 WP_001015120.1 shikimate kinase -
  B4893_RS07620 (B4893_07535) - 1532893..1533039 (-) 147 WP_001792109.1 hypothetical protein -
  B4893_RS07625 (B4893_07540) comGF 1533136..1533633 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  B4893_RS07630 (B4893_07545) comGE 1533551..1533850 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  B4893_RS07635 (B4893_07550) comGD 1533837..1534283 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  B4893_RS07640 (B4893_07555) comGC 1534261..1534572 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  B4893_RS07645 (B4893_07560) comGB 1534586..1535656 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  B4893_RS07650 (B4893_07565) comGA 1535628..1536602 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  B4893_RS07655 (B4893_07570) - 1536654..1537277 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  B4893_RS07660 (B4893_07575) - 1537274..1537603 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  B4893_RS07665 (B4893_07580) - 1537603..1538589 (-) 987 WP_000161309.1 ROK family glucokinase -
  B4893_RS07670 (B4893_07585) - 1538586..1538789 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=228210 B4893_RS07635 WP_001788899.1 1533837..1534283(-) (comGD) [Staphylococcus aureus strain CC5]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=228210 B4893_RS07635 WP_001788899.1 1533837..1534283(-) (comGD) [Staphylococcus aureus strain CC5]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment