Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   B7441_RS04440 Genome accession   NZ_CP021104
Coordinates   872823..874094 (+) Length   423 a.a.
NCBI ID   WP_035436539.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain FTDC 8312     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 867823..879094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7441_RS04410 rpsB 867982..868761 (+) 780 WP_003681957.1 30S ribosomal protein S2 -
  B7441_RS04415 tsf 868852..869730 (+) 879 WP_003681955.1 translation elongation factor Ts -
  B7441_RS04420 pyrH 869811..870536 (+) 726 WP_003681954.1 UMP kinase -
  B7441_RS04425 frr 870536..871096 (+) 561 WP_003681953.1 ribosome recycling factor -
  B7441_RS04430 - 871229..871996 (+) 768 WP_024271689.1 isoprenyl transferase -
  B7441_RS04435 - 872013..872801 (+) 789 WP_003681950.1 phosphatidate cytidylyltransferase -
  B7441_RS04440 eeP 872823..874094 (+) 1272 WP_035436539.1 RIP metalloprotease RseP Regulator
  B7441_RS04445 - 874128..875849 (+) 1722 WP_015638806.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46186.64 Da        Isoelectric Point: 6.8575

>NTDB_id=228185 B7441_RS04440 WP_035436539.1 872823..874094(+) (eeP) [Limosilactobacillus fermentum strain FTDC 8312]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGADEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKDSVAAKAGLVSGDKITRVATTKVSTWND
ISQAISPNPGKKLAVTYQRDGKTYHTTVTPKATKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPKKVEGILNLA
GFALLMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=228185 B7441_RS04440 WP_035436539.1 872823..874094(+) (eeP) [Limosilactobacillus fermentum strain FTDC 8312]
TTGATCATCACCATCATTACTTTTATCATTGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTAGTACGCGAGTTTTCGATTGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTTGGGGGCTACGTCCGCCTGGCCGGGGCCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTCCAATCGGCCAGCTTACCGGCACGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTTTTGGGCGGGGTGACCAAGGATT
CGGTGGCTGCCAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCAGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAACCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCGATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGGCCACCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGCACCTCGCAGGCCACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCCAAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGCTTTGCCCTCTTGATGATCCTGATGGTCCTTGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-408)

PDZ domain (PDZ_2)

(209-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482
  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482

Multiple sequence alignment