Detailed information NTG0228168

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DFI_RS10075
• Genome accession: NZ_CP021081
• Coordinates: 2077509..2078729 (-)
• Length: 406 a.a.
• NCBI ID: WP_027463021.1
• Uniprot ID: A0A221SXI9
• Organism: Deinococcus ficus strain CC-FR2-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2072509..2083729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DFI_RS10050 (DFI_10060)	-	2073409..2073843 (+)	435	WP_051307770.1	carboxymuconolactone decarboxylase family protein	-
DFI_RS10055 (DFI_10065)	-	2073881..2074540 (-)	660	WP_027463017.1	hypothetical protein	-
DFI_RS10060 (DFI_10070)	-	2074885..2075646 (+)	762	WP_027463018.1	electron transfer flavoprotein subunit beta/FixA family protein	-
DFI_RS10065 (DFI_10075)	-	2075643..2076590 (+)	948	WP_027463019.1	electron transfer flavoprotein subunit alpha/FixB family protein	-
DFI_RS10070 (DFI_10080)	-	2076671..2077444 (+)	774	WP_051307774.1	SDR family NAD(P)-dependent oxidoreductase	-
DFI_RS10075 (DFI_10085)	pilC	2077509..2078729 (-)	1221	WP_027463021.1	type II secretion system F family protein	Machinery gene
DFI_RS10080 (DFI_10090)	-	2078870..2079475 (+)	606	WP_043778063.1	L-threonylcarbamoyladenylate synthase	-
DFI_RS10085 (DFI_10095)	scpB	2079465..2080004 (+)	540	WP_051307797.1	SMC-Scp complex subunit ScpB	-
DFI_RS10090 (DFI_10100)	pnp	2080058..2082373 (+)	2316	WP_043778066.1	polyribonucleotide nucleotidyltransferase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44481.47 Da
• Isoelectric Point: 9.0448

>NTDB_id=228168 DFI_RS10075 WP_027463021.1 2077509..2078729(-) (pilC) [Deinococcus ficus strain CC-FR2-10]
MAVFEYRVRDRSGKILTSSMEAETMSQVRDLLRAKNMMIVEIKPPKAGLNADVKIPFLSDRPPGLKQVAIFSKQLATLIN
AGVPLVQSLNILQKQIENKAFQDIMKTIRTDVESGTPFSEAIAKHPKVFNRLYINLVRAGETSGTLDMVLERIAAFQEKD
LALRGKIKSAMTYPVIVLVFAFGITYFLLTTIVPQFAGILIQLNAPLPFITRMLMAVSEFLQNSTLILVAVVAAIVFAYR
AYYKTPKGRHVIDDMKLRMPVFGNLIQKSAISSFARTFGLLISSGVNIIESLDITKGTANNAIVEDTIENAKNVVMVGEQ
MSSSLATSRVFPPMVVSMVSIGEETGALDSMLDKVGDFYDREVDEAVEGLTAAIEPLMIVFLGVIIGTIVAGMFLPMFSI
IGALSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=228168 DFI_RS10075 WP_027463021.1 2077509..2078729(-) (pilC) [Deinococcus ficus strain CC-FR2-10]
ATGGCCGTCTTCGAATACCGGGTCCGTGACCGCTCCGGCAAAATCCTGACCTCCAGCATGGAAGCCGAGACCATGAGCCA
GGTCCGGGACCTGCTGAGGGCCAAGAACATGATGATCGTCGAGATCAAGCCCCCAAAAGCGGGCCTGAACGCCGACGTCA
AGATCCCCTTCCTCAGCGACCGGCCCCCCGGCCTCAAGCAGGTCGCCATCTTCAGCAAACAGCTCGCCACCCTGATCAAC
GCCGGGGTGCCGCTCGTCCAGTCCCTGAACATCCTCCAGAAACAGATTGAGAACAAGGCCTTCCAGGACATCATGAAGAC
CATCCGCACCGATGTGGAGTCTGGAACGCCGTTCAGCGAGGCGATTGCCAAGCATCCCAAGGTCTTCAACCGCCTGTACA
TCAACCTCGTGCGCGCCGGTGAAACCAGCGGGACGCTCGACATGGTGCTGGAGCGCATCGCGGCCTTCCAGGAAAAGGAC
CTCGCCCTACGCGGCAAGATCAAGAGCGCCATGACCTATCCCGTCATCGTGCTCGTGTTCGCCTTCGGGATCACGTACTT
CCTGCTGACCACGATCGTGCCGCAGTTTGCAGGGATCCTGATTCAGCTCAATGCCCCGCTGCCGTTCATCACGCGCATGC
TGATGGCTGTCTCCGAGTTCCTTCAGAACTCCACACTGATCCTGGTGGCCGTGGTGGCCGCCATCGTGTTCGCGTACCGC
GCCTACTACAAGACCCCCAAGGGTCGGCACGTGATCGACGACATGAAACTCCGCATGCCGGTCTTCGGGAACCTGATCCA
GAAAAGTGCCATCAGCTCCTTCGCGCGGACCTTCGGCCTGCTGATCAGCAGCGGCGTGAACATCATCGAAAGTCTTGACA
TCACCAAAGGCACCGCCAACAACGCCATCGTGGAAGACACCATCGAGAACGCCAAGAACGTTGTCATGGTGGGCGAGCAG
ATGAGCAGCAGCCTCGCGACCAGCCGCGTGTTCCCCCCCATGGTCGTCAGCATGGTCTCCATCGGCGAGGAGACCGGTGC
CCTGGACAGCATGCTCGATAAGGTCGGCGACTTCTACGACCGCGAGGTGGACGAGGCCGTCGAGGGCCTGACCGCAGCCA
TCGAGCCGCTCATGATCGTGTTCCTGGGCGTCATCATCGGCACGATCGTGGCCGGGATGTTCCTCCCCATGTTCAGCATC
ATCGGCGCCCTCAGCCAGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

3D structure

• AlphaFold DB: A0A221SXI9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	60.591	100	0.606