Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DFI_RS02150 Genome accession   NZ_CP021081
Coordinates   437156..439348 (-) Length   730 a.a.
NCBI ID   WP_051308188.1    Uniprot ID   A0A221STK1
Organism   Deinococcus ficus strain CC-FR2-10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432156..444348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFI_RS02135 (DFI_02140) - 433493..434950 (-) 1458 WP_081425971.1 TrkH family potassium uptake protein -
  DFI_RS02140 (DFI_02145) - 435009..436121 (+) 1113 WP_027463956.1 methyltransferase domain-containing protein -
  DFI_RS02145 (DFI_02150) - 436150..437148 (+) 999 WP_027463957.1 Gfo/Idh/MocA family protein -
  DFI_RS02150 (DFI_02155) comEC 437156..439348 (-) 2193 WP_051308188.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DFI_RS02155 (DFI_02160) comEA 439348..439725 (-) 378 WP_027463959.1 ComEA family DNA-binding protein Machinery gene
  DFI_RS02160 (DFI_02165) tuf 440028..441245 (+) 1218 WP_022800164.1 elongation factor Tu -
  DFI_RS02165 (DFI_02170) rpsJ 441249..441572 (+) 324 WP_022800323.1 30S ribosomal protein S10 -
  DFI_RS02170 (DFI_02175) rplC 441569..442189 (+) 621 WP_027463300.1 50S ribosomal protein L3 -
  DFI_RS02175 (DFI_02180) rplD 442193..442810 (+) 618 WP_022800321.1 50S ribosomal protein L4 -
  DFI_RS02180 (DFI_02185) - 442807..443094 (+) 288 WP_022800320.1 50S ribosomal protein L23 -
  DFI_RS02185 (DFI_02190) rplB 443109..443942 (+) 834 WP_022800319.1 50S ribosomal protein L2 -
  DFI_RS02190 (DFI_02195) rpsS 443955..444242 (+) 288 WP_022800318.1 30S ribosomal protein S19 -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 76792.64 Da        Isoelectric Point: 10.6880

>NTDB_id=228155 DFI_RS02150 WP_051308188.1 437156..439348(-) (comEC) [Deinococcus ficus strain CC-FR2-10]
MTPTEPRPPGRLAWPVPAALGVIGGILLGLGAGWGALVLGLGAALGLLDRRAWLTVLTGLAALAGFASLSAVQRQPDVLA
PWMGAQLTLQGRWDGQFLTLREPRARVALAPKPTARPGPLTVSGRLVRPEGRRIPGGFDQAAWLRGQGGLLVPTPSAVLV
AARVRESTREGGVRGWFRTGVTAGLNTRQAALMQAIQLGDRNEIGQEDFQEGYAVRDAFSRAGLAHLMALSGQNVALITG
LLLFLLGWTPLPTPWRYALTAAALLGFLWLVGPSPSITRAVLMGFAVLAGLMLGRGKPDPLALIALAALACLLAFPLWLL
DVGFQLSFLAVLGLTQTARVADRLPARWPHALRLGIAATVLAELATLPVIAHTFGQLPLVGLPANLLAGTVMAALVPLGF
LAGLLGPLAAPLNLVNGLLAGALLAVAETFGRAPVLTWGLISPAGFAAYYTVLGAGLLWLLGRLRTPALLAAALACMALT
FLPARLHPPRELVYLDVGQGDATLVRLPHLTVLVDAGGSVGSDYDVGGRTVLPALRALGVRKLDLVVATHADTDHIEGLS
SVLRGLPVGELWIGQRKTDDPVLTAVLNAARDRDVPVREVRRGDQVTSDGVALTVLWPEGRVWSTEDNENSVALRLDTGH
WHAAFLGDLPSATEGILGTGPLNLLKAAHHGSRHSTGDALLAQATPRDAVISVGRNTYGHPHPDVLNRLQTAGTKVWRTD
QVGTIRWPIP

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=228155 DFI_RS02150 WP_051308188.1 437156..439348(-) (comEC) [Deinococcus ficus strain CC-FR2-10]
ATGACGCCCACGGAGCCCCGGCCACCGGGCCGACTGGCGTGGCCGGTGCCGGCCGCCCTGGGCGTGATCGGCGGCATCCT
GCTGGGCCTGGGGGCCGGATGGGGCGCCCTGGTCCTGGGGCTGGGTGCGGCGCTCGGCCTGCTGGACCGCCGCGCATGGC
TGACGGTGCTGACCGGCCTCGCCGCCCTGGCCGGGTTCGCCTCCCTGAGCGCCGTGCAGCGCCAGCCGGACGTCCTGGCC
CCGTGGATGGGCGCCCAGCTGACCCTGCAGGGCCGCTGGGACGGGCAGTTCCTGACCCTGCGCGAGCCGCGCGCCCGGGT
GGCGCTGGCCCCGAAGCCCACCGCGCGCCCCGGGCCGCTCACGGTCAGCGGCCGCCTCGTGCGCCCCGAAGGCCGCCGGA
TTCCCGGGGGCTTCGATCAGGCCGCGTGGCTGCGCGGCCAGGGCGGCCTGCTGGTGCCCACCCCGTCCGCGGTGCTCGTC
GCCGCCCGGGTGCGCGAGAGCACTCGGGAAGGCGGCGTGCGCGGCTGGTTCCGGACGGGCGTGACCGCCGGCCTGAATAC
GCGACAGGCCGCGCTGATGCAGGCCATCCAGCTTGGGGACCGCAACGAGATCGGCCAGGAGGACTTCCAGGAAGGGTACG
CCGTGCGAGACGCCTTCAGCCGCGCAGGCCTGGCGCACCTGATGGCGCTCTCCGGGCAGAACGTCGCCCTGATCACGGGC
CTGCTGCTGTTCCTGCTCGGCTGGACGCCCCTGCCCACCCCCTGGCGTTACGCCCTGACGGCCGCTGCCCTGCTGGGCTT
CCTGTGGCTGGTGGGGCCCTCCCCCAGTATCACCCGCGCCGTCCTGATGGGCTTCGCGGTGCTCGCCGGGCTGATGCTCG
GCCGCGGGAAACCCGACCCGCTGGCATTGATCGCCCTGGCGGCGCTGGCGTGCCTGCTCGCCTTTCCCCTGTGGCTGCTG
GACGTCGGCTTTCAACTGTCCTTCCTGGCCGTGCTGGGCCTCACGCAGACCGCCCGGGTCGCCGACCGGCTCCCGGCCCG
CTGGCCCCACGCCCTCCGGCTGGGCATCGCCGCGACCGTCCTGGCGGAACTCGCGACCCTGCCGGTCATCGCGCACACCT
TCGGGCAGCTGCCGCTGGTGGGCCTGCCCGCCAACCTGCTGGCCGGCACGGTCATGGCCGCCCTCGTCCCCCTGGGCTTC
CTGGCCGGCCTGCTCGGCCCCCTCGCCGCCCCGCTGAACCTCGTGAACGGCCTGCTGGCCGGGGCGCTCCTGGCCGTCGC
CGAGACTTTCGGCCGGGCCCCCGTCCTCACCTGGGGCCTGATCTCCCCCGCCGGGTTCGCCGCGTACTACACCGTCCTCG
GCGCCGGCCTGCTGTGGCTGCTGGGCCGCCTCCGGACCCCCGCCCTGCTCGCCGCGGCGCTGGCGTGCATGGCCCTCACC
TTCCTCCCCGCACGTCTGCACCCCCCACGTGAACTCGTGTACCTGGATGTCGGGCAGGGGGACGCCACCCTGGTCCGCCT
GCCGCACCTGACCGTCCTGGTCGACGCGGGCGGATCGGTCGGCAGCGACTACGACGTCGGCGGCCGCACCGTCCTGCCGG
CCCTGCGGGCCCTGGGCGTGCGCAAACTCGACTTGGTCGTCGCCACGCACGCCGACACCGACCACATCGAGGGCCTGAGC
AGCGTCCTGCGCGGCCTGCCCGTGGGCGAACTGTGGATCGGGCAGCGCAAAACCGACGATCCGGTCCTGACCGCTGTCCT
GAACGCCGCCCGCGACCGGGATGTCCCCGTGCGCGAGGTCCGCCGTGGCGATCAGGTCACCTCAGACGGCGTGGCCCTCA
CTGTCCTGTGGCCGGAGGGAAGGGTGTGGAGCACCGAGGACAACGAGAACAGCGTCGCCCTGCGCCTGGACACCGGCCAT
TGGCACGCGGCGTTCCTGGGTGACCTGCCCTCGGCGACCGAGGGCATTCTGGGCACTGGTCCTCTGAATCTCTTGAAGGC
CGCGCACCACGGCAGCCGCCACAGCACCGGGGACGCCCTGCTCGCCCAGGCCACGCCCCGGGACGCGGTCATCAGCGTGG
GCCGCAACACCTACGGCCACCCCCACCCCGACGTGCTGAACCGCCTCCAGACGGCGGGCACGAAGGTCTGGCGCACCGAT
CAGGTCGGGACGATCCGCTGGCCGATTCCGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(214-461)

Beta-lactamase superfamily domain (Lactamase_B_2)

(512-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A221STK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.818

99.178

0.673

Multiple sequence alignment