Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CAB88_RS21440 Genome accession   NZ_CP021061
Coordinates   4037521..4039260 (-) Length   579 a.a.
NCBI ID   WP_000947734.1    Uniprot ID   A0A9X5W4K1
Organism   Bacillus thuringiensis strain ATCC 10792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4032521..4044260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB88_RS21405 (CAB88_21380) - 4032759..4032992 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  CAB88_RS21410 (CAB88_21385) - 4033042..4033770 (-) 729 WP_000172589.1 glycerophosphodiester phosphodiesterase -
  CAB88_RS21415 (CAB88_21390) - 4033821..4033967 (+) 147 WP_001247671.1 YycC family protein -
  CAB88_RS21420 (CAB88_21395) - 4034207..4034770 (-) 564 WP_000790987.1 PRK06770 family protein -
  CAB88_RS21425 (CAB88_21400) spo0A 4035022..4035816 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  CAB88_RS21435 (CAB88_21410) spoIVB 4036104..4037402 (-) 1299 WP_015055189.1 SpoIVB peptidase -
  CAB88_RS21440 (CAB88_21415) recN 4037521..4039260 (-) 1740 WP_000947734.1 DNA repair protein RecN Machinery gene
  CAB88_RS21445 (CAB88_21420) argR 4039525..4039974 (-) 450 WP_001032580.1 arginine repressor ArgR -
  CAB88_RS21450 (CAB88_21425) - 4040117..4040956 (-) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  CAB88_RS21455 (CAB88_21430) dxs 4040960..4042852 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CAB88_RS21460 (CAB88_21435) ispA 4043154..4044044 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65839.94 Da        Isoelectric Point: 4.8260

>NTDB_id=228078 CAB88_RS21440 WP_000947734.1 4037521..4039260(-) (recN) [Bacillus thuringiensis strain ATCC 10792]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=228078 CAB88_RS21440 WP_000947734.1 4037521..4039260(-) (recN) [Bacillus thuringiensis strain ATCC 10792]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTGTTTTATGTTGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAGAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAAGCTGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCATTAGGTGATGCATATCGTTCATTGAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATCATGATTCAATTGCAAATAGCTATTACTTGTTAGAAGAGGTTGCATATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAAGAAATATTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATCCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCGACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCTGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACGGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment