Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CAB88_RS21425 Genome accession   NZ_CP021061
Coordinates   4035022..4035816 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus thuringiensis strain ATCC 10792     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4030022..4040816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB88_RS21400 (CAB88_21375) - 4030549..4032621 (-) 2073 WP_000810971.1 sigma-54-dependent Fis family transcriptional regulator -
  CAB88_RS21405 (CAB88_21380) - 4032759..4032992 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  CAB88_RS21410 (CAB88_21385) - 4033042..4033770 (-) 729 WP_000172589.1 glycerophosphodiester phosphodiesterase -
  CAB88_RS21415 (CAB88_21390) - 4033821..4033967 (+) 147 WP_001247671.1 YycC family protein -
  CAB88_RS21420 (CAB88_21395) - 4034207..4034770 (-) 564 WP_000790987.1 PRK06770 family protein -
  CAB88_RS21425 (CAB88_21400) spo0A 4035022..4035816 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  CAB88_RS21435 (CAB88_21410) spoIVB 4036104..4037402 (-) 1299 WP_015055189.1 SpoIVB peptidase -
  CAB88_RS21440 (CAB88_21415) recN 4037521..4039260 (-) 1740 WP_000947734.1 DNA repair protein RecN Machinery gene
  CAB88_RS21445 (CAB88_21420) argR 4039525..4039974 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=228077 CAB88_RS21425 WP_011110369.1 4035022..4035816(-) (spo0A) [Bacillus thuringiensis strain ATCC 10792]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=228077 CAB88_RS21425 WP_011110369.1 4035022..4035816(-) (spo0A) [Bacillus thuringiensis strain ATCC 10792]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAGCCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAATGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGAGCAATTC
GTCACGCGATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment