Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | CA207_RS07215 | Genome accession | NZ_CP021058 |
| Coordinates | 1379686..1380642 (-) | Length | 318 a.a. |
| NCBI ID | WP_086038846.1 | Uniprot ID | - |
| Organism | Macrococcoides caseolyticum strain IMD0819 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1328128..1379735 | 1379686..1380642 | flank | -49 |
Gene organization within MGE regions
Location: 1328128..1380642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA207_RS06870 (CA207_14260) | - | 1328128..1328649 (-) | 522 | WP_235606408.1 | IbrB-like domain-containing protein | - |
| CA207_RS06875 (CA207_14270) | - | 1328624..1329907 (-) | 1284 | WP_086038780.1 | DUF3440 domain-containing protein | - |
| CA207_RS06880 (CA207_14280) | - | 1329907..1331067 (-) | 1161 | WP_086038781.1 | helicase-related protein | - |
| CA207_RS06885 (CA207_14290) | - | 1331127..1331492 (-) | 366 | WP_086038782.1 | hypothetical protein | - |
| CA207_RS06890 (CA207_14300) | - | 1331470..1332108 (-) | 639 | WP_086038783.1 | hypothetical protein | - |
| CA207_RS06895 (CA207_14310) | - | 1332131..1332526 (-) | 396 | WP_086038784.1 | hypothetical protein | - |
| CA207_RS06900 (CA207_14320) | - | 1332656..1332925 (-) | 270 | WP_086038785.1 | hypothetical protein | - |
| CA207_RS06905 (CA207_14330) | - | 1333035..1333796 (-) | 762 | WP_086038786.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CA207_RS06910 (CA207_14340) | - | 1333798..1334064 (-) | 267 | WP_086038787.1 | phage holin | - |
| CA207_RS06915 (CA207_14350) | - | 1334107..1334427 (-) | 321 | WP_086038788.1 | hypothetical protein | - |
| CA207_RS06920 (CA207_14360) | - | 1334458..1334745 (-) | 288 | WP_086038789.1 | hypothetical protein | - |
| CA207_RS12200 (CA207_14370) | - | 1334791..1334958 (-) | 168 | WP_162485214.1 | hypothetical protein | - |
| CA207_RS06925 (CA207_14380) | - | 1334951..1339066 (-) | 4116 | WP_086038790.1 | phage tail spike protein | - |
| CA207_RS06930 (CA207_14390) | - | 1339066..1339500 (-) | 435 | WP_086038791.1 | hypothetical protein | - |
| CA207_RS06935 (CA207_14400) | - | 1339490..1345354 (-) | 5865 | WP_086038792.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CA207_RS06940 (CA207_14410) | - | 1345394..1345777 (-) | 384 | WP_086038793.1 | hypothetical protein | - |
| CA207_RS06945 (CA207_14420) | - | 1345732..1346253 (-) | 522 | WP_086038794.1 | hypothetical protein | - |
| CA207_RS06950 (CA207_14430) | - | 1346329..1346907 (-) | 579 | WP_086038795.1 | hypothetical protein | - |
| CA207_RS06955 (CA207_14440) | - | 1346971..1347351 (-) | 381 | WP_086038796.1 | phage tail terminator protein | - |
| CA207_RS06960 (CA207_14450) | - | 1347356..1347838 (-) | 483 | WP_157821166.1 | HK97 gp10 family phage protein | - |
| CA207_RS12205 (CA207_14460) | - | 1347828..1348172 (-) | 345 | WP_157821347.1 | hypothetical protein | - |
| CA207_RS06965 (CA207_14470) | - | 1348172..1348555 (-) | 384 | WP_086038798.1 | hypothetical protein | - |
| CA207_RS06970 (CA207_14480) | - | 1348573..1348848 (-) | 276 | WP_086038799.1 | hypothetical protein | - |
| CA207_RS06975 (CA207_14490) | - | 1348895..1349908 (-) | 1014 | WP_086038800.1 | major capsid protein | - |
| CA207_RS06980 (CA207_14500) | - | 1349928..1350293 (-) | 366 | WP_086038801.1 | hypothetical protein | - |
| CA207_RS06985 (CA207_14510) | - | 1350308..1350904 (-) | 597 | WP_086038802.1 | phage scaffolding protein | - |
| CA207_RS06990 (CA207_14520) | - | 1351159..1351416 (-) | 258 | WP_086038803.1 | hypothetical protein | - |
| CA207_RS06995 (CA207_14530) | - | 1351431..1351646 (-) | 216 | WP_086038804.1 | hypothetical protein | - |
| CA207_RS07000 (CA207_14540) | - | 1351624..1352712 (-) | 1089 | WP_086038805.1 | phage minor capsid protein | - |
| CA207_RS07005 (CA207_14550) | - | 1352717..1354336 (-) | 1620 | WP_086038806.1 | hypothetical protein | - |
| CA207_RS07010 (CA207_14560) | - | 1354349..1355641 (-) | 1293 | WP_086038807.1 | PBSX family phage terminase large subunit | - |
| CA207_RS07015 (CA207_14570) | - | 1355638..1356351 (-) | 714 | WP_086038808.1 | hypothetical protein | - |
| CA207_RS07020 (CA207_14580) | - | 1356462..1356890 (-) | 429 | WP_086038809.1 | hypothetical protein | - |
| CA207_RS07025 (CA207_14590) | - | 1357165..1357545 (-) | 381 | WP_235606410.1 | hypothetical protein | - |
| CA207_RS07030 (CA207_14600) | - | 1357586..1358071 (-) | 486 | WP_086038811.1 | Holliday junction resolvase RecU | - |
| CA207_RS07035 (CA207_14610) | - | 1358120..1358647 (-) | 528 | WP_086038812.1 | dUTP diphosphatase | - |
| CA207_RS12210 (CA207_14620) | - | 1358651..1358821 (-) | 171 | WP_162485215.1 | hypothetical protein | - |
| CA207_RS07040 (CA207_14630) | - | 1358818..1359180 (-) | 363 | WP_235606412.1 | hypothetical protein | - |
| CA207_RS07045 (CA207_14650) | - | 1359303..1359542 (-) | 240 | WP_101141824.1 | helix-turn-helix domain-containing protein | - |
| CA207_RS07050 (CA207_14660) | - | 1359565..1359792 (-) | 228 | WP_086038815.1 | hypothetical protein | - |
| CA207_RS07055 (CA207_14670) | - | 1359814..1360032 (-) | 219 | WP_086038816.1 | hypothetical protein | - |
| CA207_RS07060 (CA207_14680) | - | 1360054..1360446 (-) | 393 | WP_086038817.1 | hypothetical protein | - |
| CA207_RS07065 (CA207_14690) | - | 1360484..1360864 (-) | 381 | WP_086038818.1 | YopX family protein | - |
| CA207_RS07070 (CA207_14700) | - | 1360876..1361145 (-) | 270 | WP_157820873.1 | hypothetical protein | - |
| CA207_RS07075 (CA207_14710) | - | 1361142..1362299 (-) | 1158 | WP_086038820.1 | DUF3310 domain-containing protein | - |
| CA207_RS07080 (CA207_14720) | - | 1362302..1362529 (-) | 228 | WP_086038821.1 | helix-turn-helix domain-containing protein | - |
| CA207_RS07085 (CA207_14730) | - | 1362532..1362924 (-) | 393 | WP_086038822.1 | hypothetical protein | - |
| CA207_RS07090 (CA207_14740) | - | 1362937..1363116 (-) | 180 | WP_086038823.1 | hypothetical protein | - |
| CA207_RS07095 (CA207_14750) | - | 1363113..1363334 (-) | 222 | WP_086038824.1 | hypothetical protein | - |
| CA207_RS07100 (CA207_14760) | - | 1363331..1363609 (-) | 279 | WP_086038825.1 | hypothetical protein | - |
| CA207_RS07105 (CA207_14770) | - | 1363636..1364130 (-) | 495 | WP_086038826.1 | single-stranded DNA-binding protein | - |
| CA207_RS07110 (CA207_14780) | - | 1364127..1364789 (-) | 663 | WP_162485216.1 | NUMOD4 domain-containing protein | - |
| CA207_RS07115 (CA207_14790) | - | 1364779..1364979 (-) | 201 | WP_086038828.1 | hypothetical protein | - |
| CA207_RS12215 (CA207_14800) | - | 1364976..1365152 (-) | 177 | WP_162485217.1 | hypothetical protein | - |
| CA207_RS12220 (CA207_14810) | - | 1365124..1365300 (-) | 177 | WP_157820871.1 | hypothetical protein | - |
| CA207_RS12225 (CA207_14820) | - | 1365297..1365473 (-) | 177 | WP_157821557.1 | hypothetical protein | - |
| CA207_RS07120 (CA207_14830) | - | 1365466..1366131 (-) | 666 | WP_235606414.1 | hypothetical protein | - |
| CA207_RS07125 (CA207_14840) | - | 1366106..1366891 (-) | 786 | WP_086038830.1 | ATP-binding protein | - |
| CA207_RS07130 (CA207_14850) | - | 1366869..1367753 (-) | 885 | WP_086038831.1 | phage replisome organizer N-terminal domain-containing protein | - |
| CA207_RS07135 (CA207_14860) | - | 1367767..1368483 (-) | 717 | WP_086038832.1 | MBL fold metallo-hydrolase | - |
| CA207_RS07140 (CA207_14870) | bet | 1368483..1369235 (-) | 753 | WP_086038833.1 | phage recombination protein Bet | - |
| CA207_RS07145 (CA207_14880) | - | 1369237..1371213 (-) | 1977 | WP_086038834.1 | AAA family ATPase | - |
| CA207_RS07150 (CA207_14890) | - | 1371213..1371395 (-) | 183 | WP_086038835.1 | hypothetical protein | - |
| CA207_RS07155 (CA207_14900) | - | 1371392..1372153 (-) | 762 | WP_201260159.1 | phage antirepressor KilAC domain-containing protein | - |
| CA207_RS07160 (CA207_14910) | - | 1372292..1372528 (+) | 237 | WP_041635943.1 | hypothetical protein | - |
| CA207_RS07165 (CA207_14930) | - | 1372622..1372813 (-) | 192 | WP_086038837.1 | hypothetical protein | - |
| CA207_RS07170 (CA207_14940) | - | 1372815..1373060 (-) | 246 | WP_086038838.1 | hypothetical protein | - |
| CA207_RS07175 (CA207_14950) | - | 1373199..1373702 (-) | 504 | WP_086038839.1 | hypothetical protein | - |
| CA207_RS07180 (CA207_14960) | - | 1373818..1374078 (-) | 261 | WP_162485219.1 | helix-turn-helix transcriptional regulator | - |
| CA207_RS07185 (CA207_14970) | - | 1374231..1374605 (+) | 375 | WP_086038841.1 | helix-turn-helix domain-containing protein | - |
| CA207_RS07190 (CA207_14980) | - | 1374630..1375709 (+) | 1080 | WP_162485220.1 | DUF4352 domain-containing protein | - |
| CA207_RS07195 (CA207_14990) | - | 1375736..1376683 (+) | 948 | WP_235606420.1 | thermonuclease family protein | - |
| CA207_RS07200 (CA207_15000) | - | 1376802..1377263 (+) | 462 | WP_086038843.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CA207_RS07205 (CA207_15010) | - | 1377267..1378481 (+) | 1215 | WP_086038844.1 | tyrosine-type recombinase/integrase | - |
| CA207_RS12230 | - | 1378569..1378640 (-) | 72 | WP_232618450.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CA207_RS07210 (CA207_15020) | comGB | 1378662..1379735 (-) | 1074 | WP_086038845.1 | competence type IV pilus assembly protein ComGB | - |
| CA207_RS07215 (CA207_15030) | comGA | 1379686..1380642 (-) | 957 | WP_086038846.1 | ATPase, T2SS/T4P/T4SS family | Machinery gene |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36566.13 Da Isoelectric Point: 6.0518
>NTDB_id=227991 CA207_RS07215 WP_086038846.1 1379686..1380642(-) (comGA) [Macrococcoides caseolyticum strain IMD0819]
MEKLFNEIIEQAILQSASDIHFIPCDKNVSIKFRVQGDIEEYSDIDDILFKKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
DNLRYNIRASTLPRSLGDEACVLRIIRQSFIDEYQTDDQILFDQMKKSSGIIIISGPTGSGKSTLMYQLVHFAKDTLKRQ
VISIEDPVEQHLDGIIQVNVNEKAEITYQTAIKAILRCDPDIIMLGEVAQQVINAGLSGHLVLTTLHANDCIGALFRLKE
MGINAVDLYQSINLIINQRLIKKRDEKERILAYEFLTKKDIEKYLKNKHINYRTLADILKEMYETNQISQHEFEKFDL
MEKLFNEIIEQAILQSASDIHFIPCDKNVSIKFRVQGDIEEYSDIDDILFKKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
DNLRYNIRASTLPRSLGDEACVLRIIRQSFIDEYQTDDQILFDQMKKSSGIIIISGPTGSGKSTLMYQLVHFAKDTLKRQ
VISIEDPVEQHLDGIIQVNVNEKAEITYQTAIKAILRCDPDIIMLGEVAQQVINAGLSGHLVLTTLHANDCIGALFRLKE
MGINAVDLYQSINLIINQRLIKKRDEKERILAYEFLTKKDIEKYLKNKHINYRTLADILKEMYETNQISQHEFEKFDL
Nucleotide
Download Length: 957 bp
>NTDB_id=227991 CA207_RS07215 WP_086038846.1 1379686..1380642(-) (comGA) [Macrococcoides caseolyticum strain IMD0819]
ATGGAGAAATTATTCAATGAAATAATAGAGCAGGCAATTTTACAAAGTGCATCAGATATACACTTCATTCCTTGTGATAA
AAATGTATCTATTAAATTTAGGGTACAAGGTGATATCGAAGAATATAGTGACATCGACGATATATTATTTAAAAAATTAC
TTTCATATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCTCAGAGTGGGATAATACATTTTAATCTG
GATAACTTACGATATAATATTCGCGCATCTACTTTACCTCGTTCATTAGGCGATGAAGCATGTGTATTGAGAATCATCAG
ACAAAGTTTTATAGATGAATATCAGACAGATGATCAGATATTGTTCGATCAGATGAAAAAATCAAGCGGTATAATTATTA
TTAGTGGGCCAACTGGAAGTGGTAAGAGTACATTAATGTATCAACTTGTACATTTTGCAAAGGACACATTGAAACGCCAA
GTAATTTCAATAGAAGATCCTGTGGAGCAGCATCTTGACGGTATCATACAAGTTAATGTTAACGAAAAAGCAGAAATAAC
ATATCAAACCGCAATTAAGGCAATCCTTAGATGTGATCCAGATATCATTATGCTAGGTGAAGTAGCACAGCAAGTTATCA
ATGCGGGGCTGAGTGGTCATTTAGTTTTAACGACATTACATGCAAATGATTGTATTGGCGCATTATTTCGGTTAAAAGAA
ATGGGAATTAATGCTGTTGATCTTTATCAAAGTATCAATTTGATAATCAATCAAAGACTGATTAAAAAAAGAGATGAAAA
GGAGCGTATTCTAGCCTATGAATTTCTGACAAAAAAGGATATTGAAAAATATTTAAAGAATAAGCACATAAACTATAGAA
CGTTGGCTGACATACTAAAGGAGATGTATGAAACAAATCAGATTTCACAACATGAATTTGAAAAATTTGATCTTTAA
ATGGAGAAATTATTCAATGAAATAATAGAGCAGGCAATTTTACAAAGTGCATCAGATATACACTTCATTCCTTGTGATAA
AAATGTATCTATTAAATTTAGGGTACAAGGTGATATCGAAGAATATAGTGACATCGACGATATATTATTTAAAAAATTAC
TTTCATATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCTCAGAGTGGGATAATACATTTTAATCTG
GATAACTTACGATATAATATTCGCGCATCTACTTTACCTCGTTCATTAGGCGATGAAGCATGTGTATTGAGAATCATCAG
ACAAAGTTTTATAGATGAATATCAGACAGATGATCAGATATTGTTCGATCAGATGAAAAAATCAAGCGGTATAATTATTA
TTAGTGGGCCAACTGGAAGTGGTAAGAGTACATTAATGTATCAACTTGTACATTTTGCAAAGGACACATTGAAACGCCAA
GTAATTTCAATAGAAGATCCTGTGGAGCAGCATCTTGACGGTATCATACAAGTTAATGTTAACGAAAAAGCAGAAATAAC
ATATCAAACCGCAATTAAGGCAATCCTTAGATGTGATCCAGATATCATTATGCTAGGTGAAGTAGCACAGCAAGTTATCA
ATGCGGGGCTGAGTGGTCATTTAGTTTTAACGACATTACATGCAAATGATTGTATTGGCGCATTATTTCGGTTAAAAGAA
ATGGGAATTAATGCTGTTGATCTTTATCAAAGTATCAATTTGATAATCAATCAAAGACTGATTAAAAAAAGAGATGAAAA
GGAGCGTATTCTAGCCTATGAATTTCTGACAAAAAAGGATATTGAAAAATATTTAAAGAATAAGCACATAAACTATAGAA
CGTTGGCTGACATACTAAAGGAGATGTATGAAACAAATCAGATTTCACAACATGAATTTGAAAAATTTGATCTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
48 |
100 |
0.491 |
| comGA | Staphylococcus aureus N315 |
48 |
100 |
0.491 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
33.908 |
100 |
0.371 |