Detailed information NTG0227875

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: C4N11_RS11790
• Genome accession: NZ_CP026670
• Coordinates: 2205285..2206382 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266669.1
• Uniprot ID: C1CBK4
• Organism: Streptococcus pneumoniae strain endophthalmitis isolate 335
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2200285..2211382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4N11_RS11765 (C4N11_11765)	pgsA	2200806..2201351 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
C4N11_RS11770 (C4N11_11770)	rodZ	2201362..2202183 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
C4N11_RS11775 (C4N11_11775)	-	2202225..2203508 (-)	1284	WP_000170191.1	pitrilysin family protein	-
C4N11_RS11780 (C4N11_11780)	-	2203505..2204755 (-)	1251	WP_000424267.1	pitrilysin family protein	-
C4N11_RS11785 (C4N11_11785)	yaaA	2204914..2205282 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
C4N11_RS11790 (C4N11_11790)	recF	2205285..2206382 (+)	1098	WP_000266669.1	DNA replication/repair protein RecF	Machinery gene
C4N11_RS11795 (C4N11_11795)	guaB	2206434..2207912 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
C4N11_RS11800 (C4N11_11800)	trpS	2208064..2209089 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
C4N11_RS11805 (C4N11_11805)	-	2209295..2210917 (+)	1623	WP_000958769.1	ABC-F family ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41960.00 Da
• Isoelectric Point: 8.6746

>NTDB_id=227875 C4N11_RS11790 WP_000266669.1 2205285..2206382(+) (recF) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=227875 C4N11_RS11790 WP_000266669.1 2205285..2206382(+) (recF) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: C1CBK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46