Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B6257_RS05270 Genome accession   NZ_CP021011
Coordinates   1001695..1002339 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain GFP-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 996695..1007339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS05235 (B6257_05215) - 997880..998311 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  B6257_RS05240 (B6257_05220) - 998311..998652 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  B6257_RS05245 (B6257_05225) - 998645..1000126 (+) 1482 WP_039254060.1 Na+/H+ antiporter subunit D -
  B6257_RS05250 (B6257_05230) - 1000132..1000608 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  B6257_RS05255 (B6257_05235) - 1000608..1000892 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  B6257_RS05260 (B6257_05240) mnhG 1000876..1001250 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  B6257_RS05265 (B6257_05245) - 1001290..1001673 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  B6257_RS05270 (B6257_05250) comA 1001695..1002339 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  B6257_RS05275 (B6257_05255) comP 1002420..1004723 (-) 2304 WP_101562386.1 histidine kinase Regulator
  B6257_RS05285 (B6257_05265) comQ 1004876..1005808 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  B6257_RS05290 (B6257_05270) degQ 1005993..1006133 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  B6257_RS05295 (B6257_05275) - 1006598..1006939 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=227796 B6257_RS05270 WP_003152052.1 1001695..1002339(-) (comA) [Bacillus velezensis strain GFP-2]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=227796 B6257_RS05270 WP_003152052.1 1001695..1002339(-) (comA) [Bacillus velezensis strain GFP-2]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACTCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment