Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XcfCFBP6165P_RS15890 Genome accession   NZ_CP020998
Coordinates   3685947..3687401 (+) Length   484 a.a.
NCBI ID   WP_022558668.1    Uniprot ID   -
Organism   Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3680947..3692401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcfCFBP6165P_RS15870 (XcfCFBP6165P_12470) - 3680981..3681352 (-) 372 Protein_3098 endonuclease domain-containing protein -
  XcfCFBP6165P_RS15875 (XcfCFBP6165P_12465) sucD 3681763..3682638 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  XcfCFBP6165P_RS15880 (XcfCFBP6165P_12460) sucC 3682663..3683832 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  XcfCFBP6165P_RS15885 (XcfCFBP6165P_12455) - 3684064..3685677 (+) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -
  XcfCFBP6165P_RS15890 (XcfCFBP6165P_12450) pilR 3685947..3687401 (+) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator
  XcfCFBP6165P_RS15895 (XcfCFBP6165P_12440) pilB 3687851..3689587 (-) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XcfCFBP6165P_RS15900 (XcfCFBP6165P_12435) - 3689650..3690051 (-) 402 WP_046121195.1 pilin -
  XcfCFBP6165P_RS15905 (XcfCFBP6165P_12430) - 3690211..3691191 (-) 981 WP_007975311.1 IS5-like element ISXfu2 family transposase -
  XcfCFBP6165P_RS15910 (XcfCFBP6165P_12425) pilE 3691321..3691761 (-) 441 WP_005934296.1 pilin Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52498.30 Da        Isoelectric Point: 7.0128

>NTDB_id=227729 XcfCFBP6165P_RS15890 WP_022558668.1 3685947..3687401(+) (pilR) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=227729 XcfCFBP6165P_RS15890 WP_022558668.1 3685947..3687401(+) (pilR) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment