Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XcfCFBP4885P_RS06975 Genome accession   NZ_CP020992
Coordinates   1606367..1607821 (-) Length   484 a.a.
NCBI ID   WP_022558668.1    Uniprot ID   -
Organism   Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601367..1612821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcfCFBP4885P_RS06955 (XcfCFBP4885P_13095) pilC 1601585..1602841 (-) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  XcfCFBP4885P_RS06960 (XcfCFBP4885P_13090) pilE 1603168..1603608 (+) 441 WP_005934296.1 pilin Machinery gene
  XcfCFBP4885P_RS06965 (XcfCFBP4885P_13085) - 1603717..1604118 (+) 402 WP_046121195.1 pilin -
  XcfCFBP4885P_RS06970 (XcfCFBP4885P_13080) pilB 1604181..1605917 (+) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XcfCFBP4885P_RS06975 (XcfCFBP4885P_13070) pilR 1606367..1607821 (-) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator
  XcfCFBP4885P_RS06980 (XcfCFBP4885P_13065) - 1608091..1609704 (-) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -
  XcfCFBP4885P_RS06985 (XcfCFBP4885P_13060) sucC 1609936..1611105 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  XcfCFBP4885P_RS06990 (XcfCFBP4885P_13055) sucD 1611130..1612005 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  XcfCFBP4885P_RS21770 - 1612183..1612367 (+) 185 Protein_1368 hypothetical protein -
  XcfCFBP4885P_RS06995 (XcfCFBP4885P_13045) - 1612422..1612793 (+) 372 Protein_1369 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52498.30 Da        Isoelectric Point: 7.0128

>NTDB_id=227707 XcfCFBP4885P_RS06975 WP_022558668.1 1606367..1607821(-) (pilR) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=227707 XcfCFBP4885P_RS06975 WP_022558668.1 1606367..1607821(-) (pilR) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment