Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C4J63_RS21870 Genome accession   NZ_CP026612
Coordinates   4258645..4259382 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain DTU-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4253645..4264382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J63_RS21855 (C4J63_21855) clpC 4254099..4256672 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C4J63_RS21860 (C4J63_21860) yfiH 4256802..4257533 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  C4J63_RS21865 (C4J63_21865) rluD 4257530..4258510 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C4J63_RS21870 (C4J63_21870) comL 4258645..4259382 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C4J63_RS21880 (C4J63_21880) raiA 4259653..4259994 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C4J63_RS21885 (C4J63_21885) pheL 4260098..4260145 (+) 48 WP_010723158.1 phe operon leader peptide -
  C4J63_RS21890 (C4J63_21890) pheA 4260244..4261404 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C4J63_RS21895 (C4J63_21895) tyrA 4261447..4262568 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C4J63_RS21900 (C4J63_21900) aroF 4262579..4263649 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C4J63_RS21905 (C4J63_21905) yfiL 4263859..4264224 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=227595 C4J63_RS21870 WP_000197686.1 4258645..4259382(+) (comL) [Escherichia coli strain DTU-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=227595 C4J63_RS21870 WP_000197686.1 4258645..4259382(+) (comL) [Escherichia coli strain DTU-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376