Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   B9W05_RS02565 Genome accession   NZ_CP020942
Coordinates   509491..510942 (-) Length   483 a.a.
NCBI ID   WP_173340383.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain PXO61     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 504491..515942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W05_RS02540 (B9W05_02475) - 504740..505369 (+) 630 WP_011408070.1 hypothetical protein -
  B9W05_RS26105 (B9W05_02480) - 505339..506864 (+) 1526 Protein_470 hypothetical protein -
  B9W05_RS02550 (B9W05_02485) pilB 506899..508632 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B9W05_RS25235 (B9W05_02490) - 508641..508988 (-) 348 WP_305954854.1 Fic family protein -
  B9W05_RS25240 - 508989..509150 (-) 162 WP_153296778.1 hypothetical protein -
  B9W05_RS02560 (B9W05_02495) - 509212..509418 (-) 207 WP_027703281.1 YhfG family protein -
  B9W05_RS02565 (B9W05_02500) pilR 509491..510942 (-) 1452 WP_173340383.1 sigma-54 dependent transcriptional regulator Regulator
  B9W05_RS02570 (B9W05_02505) - 511213..512826 (-) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  B9W05_RS02575 (B9W05_02510) sucC 513060..514229 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  B9W05_RS02580 (B9W05_02515) sucD 514254..515129 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  B9W05_RS02585 (B9W05_02520) - 515449..515745 (+) 297 WP_011408075.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52431.16 Da        Isoelectric Point: 6.9755

>NTDB_id=227286 B9W05_RS02565 WP_173340383.1 509491..510942(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO61]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKNLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=227286 B9W05_RS02565 WP_173340383.1 509491..510942(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO61]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCGGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGGTCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment