Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   B9L64_RS10250 Genome accession   NZ_CP020915
Coordinates   2007498..2008187 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain 50-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2002498..2013187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS10215 flgN 2002678..2003160 (-) 483 WP_003227999.1 flagellar protein FlgN -
  B9L64_RS10220 flgM 2003176..2003442 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  B9L64_RS10225 yvyF 2003523..2003942 (-) 420 WP_110109496.1 TIGR03826 family flagellar region protein -
  B9L64_RS10230 comFC 2004016..2004738 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  B9L64_RS10235 comFB 2004702..2004998 (-) 297 WP_003227989.1 late competence protein ComFB -
  B9L64_RS10240 comFA 2005058..2006449 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  B9L64_RS10245 fakBA 2006555..2007400 (-) 846 WP_003244125.1 DegV family protein -
  B9L64_RS10250 degU 2007498..2008187 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B9L64_RS10255 degS 2008270..2009427 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  B9L64_RS10260 yvyE 2009644..2010297 (+) 654 WP_003227979.1 YigZ family protein -
  B9L64_RS10265 tagV 2010297..2011472 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  B9L64_RS10270 tagO 2011545..2012621 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=227086 B9L64_RS10250 WP_003219701.1 2007498..2008187(-) (degU) [Bacillus subtilis strain 50-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=227086 B9L64_RS10250 WP_003219701.1 2007498..2008187(-) (degU) [Bacillus subtilis strain 50-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment