Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B9L64_RS08275 Genome accession   NZ_CP020915
Coordinates   1615621..1616265 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain 50-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610621..1621265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS08240 mrpB 1611811..1612242 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  B9L64_RS08245 mrpC 1612242..1612583 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  B9L64_RS08250 mrpD 1612576..1614057 (+) 1482 WP_110109473.1 Na+/H+ antiporter subunit D -
  B9L64_RS08255 mrpE 1614063..1614539 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  B9L64_RS08260 mrpF 1614539..1614823 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  B9L64_RS08265 mnhG 1614807..1615181 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  B9L64_RS08270 yuxO 1615222..1615602 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  B9L64_RS08275 comA 1615621..1616265 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  B9L64_RS08280 comP 1616346..1618658 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  B9L64_RS08285 comX 1618674..1618895 (-) 222 WP_014480704.1 competence pheromone ComX -
  B9L64_RS08290 - 1618897..1619760 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  B9L64_RS08295 degQ 1619945..1620085 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  B9L64_RS21030 - 1620307..1620432 (+) 126 WP_003228793.1 hypothetical protein -
  B9L64_RS08300 - 1620547..1620915 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=227079 B9L64_RS08275 WP_003220716.1 1615621..1616265(-) (comA) [Bacillus subtilis strain 50-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=227079 B9L64_RS08275 WP_003220716.1 1615621..1616265(-) (comA) [Bacillus subtilis strain 50-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment