Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C2R02_RS14250 Genome accession   NZ_CP026359
Coordinates   2736146..2736883 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2_0     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2731146..2741883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2R02_RS14235 clpC 2731600..2734173 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C2R02_RS14240 yfiH 2734303..2735034 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  C2R02_RS14245 rluD 2735031..2736011 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C2R02_RS14250 comL 2736146..2736883 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C2R02_RS14260 raiA 2737154..2737495 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C2R02_RS14265 pheL 2737599..2737646 (+) 48 WP_010723158.1 phe operon leader peptide -
  C2R02_RS14270 pheA 2737745..2738905 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C2R02_RS14275 tyrA 2738948..2740069 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C2R02_RS14280 aroF 2740080..2741150 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C2R02_RS14285 yfiL 2741360..2741725 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=226858 C2R02_RS14250 WP_000197686.1 2736146..2736883(+) (comL) [Escherichia coli strain 2_0]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=226858 C2R02_RS14250 WP_000197686.1 2736146..2736883(+) (comL) [Escherichia coli strain 2_0]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376