Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   B4U37_RS06985 Genome accession   NZ_CP020880
Coordinates   1344090..1345043 (+) Length   317 a.a.
NCBI ID   WP_088017644.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain 20a     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1339090..1350043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U37_RS06965 (B4U37_06955) clpB 1339117..1341711 (+) 2595 WP_088017641.1 ATP-dependent chaperone ClpB -
  B4U37_RS06970 (B4U37_06960) - 1341767..1341949 (-) 183 WP_010192034.1 YjzD family protein -
  B4U37_RS21910 - 1342064..1342201 (+) 138 WP_157663733.1 hypothetical protein -
  B4U37_RS06975 (B4U37_06965) - 1342349..1343086 (+) 738 WP_088017642.1 hypothetical protein -
  B4U37_RS06980 (B4U37_06970) - 1343178..1343948 (+) 771 WP_088017643.1 NAD(P)-dependent oxidoreductase -
  B4U37_RS06985 (B4U37_06975) med 1344090..1345043 (+) 954 WP_088017644.1 BMP family ABC transporter substrate-binding protein Regulator
  B4U37_RS06990 (B4U37_06980) comZ 1345059..1345247 (+) 189 WP_088017645.1 ComZ family protein Regulator
  B4U37_RS06995 (B4U37_06985) - 1345308..1345550 (-) 243 WP_088017646.1 hypothetical protein -
  B4U37_RS07000 (B4U37_06990) - 1345759..1346691 (+) 933 WP_088017647.1 beta-ketoacyl-ACP synthase III -
  B4U37_RS07005 (B4U37_06995) fabF 1346740..1347978 (+) 1239 WP_088020199.1 beta-ketoacyl-ACP synthase II -
  B4U37_RS07015 (B4U37_07005) - 1348513..1349295 (+) 783 WP_088017649.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35080.08 Da        Isoelectric Point: 3.8750

>NTDB_id=226830 B4U37_RS06985 WP_088017644.1 1344090..1345043(+) (med) [Sutcliffiella horikoshii strain 20a]
MKKSLMVVILFILLLTACGQTTPESGDQKVGLLVPDTISDQVWGTKGYKGLLRIQTEYDLDVYYKEGIHTATSIKDAVKE
FDKDEVTLVFGHGSEYAQTFNEISSDYPDIHFVCFNSQVQGDNVTSLNFEAHAMGFFGGMVAGHMTETNTIGILAAFEWQ
PEVDGFFEGALYENPDAEIIIEYTQDWNDPDKALEVLDSMIDQEVDVVYPAGDGYNVPVINSLKEQGLYAVGFVSDQSDL
GENTVLTSTIQHVPALYELVASRFFAGELESGNLSFDFKDDVISLGTFSPLVSEEYQASINQQIEDYKSTGLLPNEK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=226830 B4U37_RS06985 WP_088017644.1 1344090..1345043(+) (med) [Sutcliffiella horikoshii strain 20a]
ATGAAAAAATCATTAATGGTAGTCATACTATTTATTCTTTTATTAACTGCATGTGGACAAACTACTCCTGAAAGCGGAGA
TCAAAAGGTCGGCTTGTTGGTCCCTGATACGATAAGTGATCAAGTATGGGGAACAAAAGGCTATAAAGGGCTGTTGCGGA
TTCAAACGGAATATGACCTGGATGTATATTATAAAGAAGGCATACATACTGCTACATCGATTAAAGATGCGGTGAAAGAG
TTTGATAAAGACGAAGTTACCTTGGTATTTGGGCATGGCAGCGAATATGCTCAGACATTCAATGAGATATCATCTGATTA
TCCTGACATCCATTTTGTATGTTTTAATTCCCAAGTACAAGGGGACAATGTAACAAGTTTGAATTTTGAAGCACATGCCA
TGGGCTTTTTCGGTGGAATGGTAGCTGGCCATATGACGGAGACTAATACTATTGGAATTTTAGCCGCATTTGAATGGCAG
CCTGAAGTGGACGGATTCTTCGAAGGGGCATTATATGAAAATCCCGATGCTGAAATTATAATAGAGTACACTCAAGACTG
GAATGATCCTGATAAGGCATTGGAAGTGCTTGACAGTATGATCGATCAAGAGGTGGATGTTGTGTATCCTGCTGGTGACG
GATATAATGTACCTGTCATCAATAGTCTAAAGGAACAAGGGCTCTATGCGGTAGGATTCGTCTCTGATCAGTCCGACTTA
GGAGAGAATACTGTACTTACCAGTACCATACAGCATGTCCCTGCCTTGTATGAATTGGTAGCCAGTCGTTTCTTTGCAGG
GGAATTAGAATCTGGTAACCTTTCCTTCGATTTTAAAGATGATGTCATATCACTCGGGACATTCAGTCCGCTAGTAAGCG
AGGAATACCAGGCTAGCATTAATCAACAAATCGAGGATTATAAGTCTACCGGTTTATTACCAAACGAAAAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.822

99.054

0.533

Multiple sequence alignment