Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   B9C53_RS18040 Genome accession   NZ_CP020874
Coordinates   3665412..3666212 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain GYL4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3660412..3671212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS18020 (B9C53_17960) - 3660534..3661379 (+) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  B9C53_RS18025 (B9C53_17965) ahrC 3661476..3661925 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  B9C53_RS18030 (B9C53_17970) recN 3661957..3663687 (+) 1731 WP_038459152.1 DNA repair protein RecN Machinery gene
  B9C53_RS18035 (B9C53_17975) spoIVB 3663851..3665131 (+) 1281 WP_038459150.1 SpoIVB peptidase -
  B9C53_RS18040 (B9C53_17980) spo0A 3665412..3666212 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  B9C53_RS18050 (B9C53_17985) alr 3666361..3667542 (-) 1182 WP_038459148.1 alanine racemase -
  B9C53_RS18055 (B9C53_17990) - 3667719..3667931 (-) 213 WP_038459145.1 spore germination protein -
  B9C53_RS18060 (B9C53_17995) - 3668057..3668269 (-) 213 WP_007408362.1 spore germination protein -
  B9C53_RS18065 (B9C53_18000) - 3668396..3669514 (-) 1119 WP_038460835.1 NADH-dependent flavin oxidoreductase -
  B9C53_RS19685 - 3669608..3669745 (-) 138 WP_014470646.1 hypothetical protein -
  B9C53_RS18070 (B9C53_18005) - 3670042..3670674 (-) 633 WP_108655008.1 DUF1232 domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=226811 B9C53_RS18040 WP_003153177.1 3665412..3666212(+) (spo0A) [Bacillus velezensis strain GYL4]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=226811 B9C53_RS18040 WP_003153177.1 3665412..3666212(+) (spo0A) [Bacillus velezensis strain GYL4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGATAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment