Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   B9C53_RS18030 Genome accession   NZ_CP020874
Coordinates   3661957..3663687 (+) Length   576 a.a.
NCBI ID   WP_038459152.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3656957..3668687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS18005 (B9C53_17945) - 3657358..3657612 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  B9C53_RS18010 (B9C53_17950) - 3657602..3658492 (+) 891 WP_007408353.1 polyprenyl synthetase family protein -
  B9C53_RS18015 (B9C53_17955) dxs 3658636..3660537 (+) 1902 WP_038459154.1 1-deoxy-D-xylulose-5-phosphate synthase -
  B9C53_RS18020 (B9C53_17960) - 3660534..3661379 (+) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  B9C53_RS18025 (B9C53_17965) ahrC 3661476..3661925 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  B9C53_RS18030 (B9C53_17970) recN 3661957..3663687 (+) 1731 WP_038459152.1 DNA repair protein RecN Machinery gene
  B9C53_RS18035 (B9C53_17975) spoIVB 3663851..3665131 (+) 1281 WP_038459150.1 SpoIVB peptidase -
  B9C53_RS18040 (B9C53_17980) spo0A 3665412..3666212 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  B9C53_RS18050 (B9C53_17985) alr 3666361..3667542 (-) 1182 WP_038459148.1 alanine racemase -
  B9C53_RS18055 (B9C53_17990) - 3667719..3667931 (-) 213 WP_038459145.1 spore germination protein -
  B9C53_RS18060 (B9C53_17995) - 3668057..3668269 (-) 213 WP_007408362.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64093.90 Da        Isoelectric Point: 4.7608

>NTDB_id=226810 B9C53_RS18030 WP_038459152.1 3661957..3663687(+) (recN) [Bacillus velezensis strain GYL4]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDRFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKRELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=226810 B9C53_RS18030 WP_038459152.1 3661957..3663687(+) (recN) [Bacillus velezensis strain GYL4]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCTTATTAGTCGGCGGCCGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGTCATCCCGTTTTTGATGTATGC
CGTGAGCAGGGAATAGACGCATCTGATGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAAGATGACAAACACTTGGAGCTTTTGGACAGGTTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGGATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCTTATTATTTGCTGGAGGATGCAACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCGCT
GAAGAGGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCTTGGGCTA
AGAAACTGGCGGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACGAACACCGGTGAACCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCTGCCATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGCCGGACGACAACGCATGTCA
CGCCGCTTTCCAAACAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTTGAAGTGACTGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.542

100

0.885

Multiple sequence alignment