Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B9C53_RS14910 Genome accession   NZ_CP020874
Coordinates   3082959..3083603 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain GYL4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3077959..3088603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS14880 (B9C53_14830) - 3078401..3078742 (-) 342 WP_038459666.1 hypothetical protein -
  B9C53_RS14890 (B9C53_14840) degQ 3079208..3079348 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  B9C53_RS14895 (B9C53_14845) - 3079500..3080411 (+) 912 WP_079891857.1 polyprenyl synthetase family protein -
  B9C53_RS14900 (B9C53_14850) comX 3080411..3080575 (+) 165 WP_007613432.1 competence pheromone ComX -
  B9C53_RS14905 (B9C53_14855) comP 3080587..3082878 (+) 2292 WP_101669783.1 histidine kinase Regulator
  B9C53_RS14910 (B9C53_14860) comA 3082959..3083603 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  B9C53_RS14915 (B9C53_14865) - 3083625..3084008 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  B9C53_RS14920 (B9C53_14870) mnhG 3084048..3084422 (-) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  B9C53_RS14925 (B9C53_14875) - 3084406..3084690 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  B9C53_RS14930 (B9C53_14880) - 3084690..3085166 (-) 477 WP_038459660.1 Na+/H+ antiporter subunit E -
  B9C53_RS14935 (B9C53_14885) - 3085172..3086653 (-) 1482 WP_038459658.1 Na+/H+ antiporter subunit D -
  B9C53_RS14940 (B9C53_14890) - 3086646..3086987 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  B9C53_RS14945 (B9C53_14895) - 3086987..3087418 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=226789 B9C53_RS14910 WP_003152052.1 3082959..3083603(+) (comA) [Bacillus velezensis strain GYL4]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=226789 B9C53_RS14910 WP_003152052.1 3082959..3083603(+) (comA) [Bacillus velezensis strain GYL4]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment