Detailed information    

insolico Bioinformatically predicted

Overview


Name   degQ   Type   Regulator
Locus tag   B9C53_RS14890 Genome accession   NZ_CP020874
Coordinates   3079208..3079348 (+) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain GYL4     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 3074208..3084348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS14860 (B9C53_14810) - 3074511..3074909 (+) 399 WP_003152031.1 YueI family protein -
  B9C53_RS14865 (B9C53_14815) - 3075006..3075557 (+) 552 WP_003152033.1 cysteine hydrolase family protein -
  B9C53_RS14870 (B9C53_14820) - 3075575..3077041 (+) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  B9C53_RS14875 (B9C53_14825) - 3077171..3078394 (+) 1224 WP_108654978.1 EAL and HDOD domain-containing protein -
  B9C53_RS14880 (B9C53_14830) - 3078401..3078742 (-) 342 WP_038459666.1 hypothetical protein -
  B9C53_RS14890 (B9C53_14840) degQ 3079208..3079348 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  B9C53_RS14895 (B9C53_14845) - 3079500..3080411 (+) 912 WP_079891857.1 polyprenyl synthetase family protein -
  B9C53_RS14900 (B9C53_14850) comX 3080411..3080575 (+) 165 WP_007613432.1 competence pheromone ComX -
  B9C53_RS14905 (B9C53_14855) comP 3080587..3082878 (+) 2292 WP_101669783.1 histidine kinase Regulator
  B9C53_RS14910 (B9C53_14860) comA 3082959..3083603 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  B9C53_RS14915 (B9C53_14865) - 3083625..3084008 (+) 384 WP_007613430.1 hotdog fold thioesterase -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=226787 B9C53_RS14890 WP_003152043.1 3079208..3079348(+) (degQ) [Bacillus velezensis strain GYL4]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=226787 B9C53_RS14890 WP_003152043.1 3079208..3079348(+) (degQ) [Bacillus velezensis strain GYL4]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains


Predicted by InterproScan.

(1-46)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891


Multiple sequence alignment