Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   B9C53_RS12930 Genome accession   NZ_CP020874
Coordinates   2702486..2703871 (+) Length   461 a.a.
NCBI ID   WP_038460045.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2697486..2708871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS12910 (B9C53_12880) - 2698633..2699280 (-) 648 WP_007614107.1 YigZ family protein -
  B9C53_RS12915 (B9C53_12885) degS 2699503..2700666 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  B9C53_RS12920 (B9C53_12890) degU 2700743..2701432 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B9C53_RS12925 (B9C53_12895) - 2701530..2702378 (+) 849 WP_003151387.1 DegV family protein -
  B9C53_RS12930 (B9C53_12900) comFA 2702486..2703871 (+) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  B9C53_RS12935 (B9C53_12905) - 2703929..2704213 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  B9C53_RS12940 (B9C53_12910) comFC 2704219..2704908 (+) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  B9C53_RS12945 (B9C53_12915) - 2704982..2705401 (+) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  B9C53_RS12950 (B9C53_12920) flgM 2705471..2705737 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B9C53_RS12955 (B9C53_12925) - 2705752..2706234 (+) 483 WP_003151394.1 flagellar protein FlgN -
  B9C53_RS12960 (B9C53_12930) flgK 2706250..2707767 (+) 1518 WP_038460039.1 flagellar hook-associated protein FlgK -
  B9C53_RS12965 (B9C53_12935) flgL 2707779..2708696 (+) 918 WP_014419007.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52335.62 Da        Isoelectric Point: 10.0546

>NTDB_id=226783 B9C53_RS12930 WP_038460045.1 2702486..2703871(+) (comFA) [Bacillus velezensis strain GYL4]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINGFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFGAPSAKRQIT
YCRACVMMGRADEQTSLYSWNQAPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVVIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNIRTEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=226783 B9C53_RS12930 WP_038460045.1 2702486..2703871(+) (comFA) [Bacillus velezensis strain GYL4]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTGGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACAGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGGCAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCGTGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCAGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTTTTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGACAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625

Multiple sequence alignment