Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B7R82_RS09405 Genome accession   NZ_CP020858
Coordinates   1883182..1883733 (-) Length   183 a.a.
NCBI ID   WP_003708930.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain ZLS006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1878324..1893261 1883182..1883733 within 0


Gene organization within MGE regions


Location: 1878324..1893261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7R82_RS09380 (B7R82_09365) - 1878324..1879106 (-) 783 WP_044005558.1 M23 family metallopeptidase -
  B7R82_RS09385 (B7R82_09370) - 1879334..1880347 (-) 1014 WP_044004260.1 glycosyltransferase -
  B7R82_RS09390 (B7R82_09375) - 1880495..1881358 (+) 864 WP_044004258.1 NAD(P)-dependent oxidoreductase -
  B7R82_RS09395 (B7R82_09380) - 1881445..1882734 (-) 1290 WP_044004256.1 ISL3 family transposase -
  B7R82_RS09400 (B7R82_09385) rpsR 1882924..1883160 (-) 237 WP_003701427.1 30S ribosomal protein S18 -
  B7R82_RS09405 (B7R82_09390) ssb 1883182..1883733 (-) 552 WP_003708930.1 single-stranded DNA-binding protein Machinery gene
  B7R82_RS09410 (B7R82_09395) rpsF 1883774..1884070 (-) 297 WP_269148675.1 30S ribosomal protein S6 -
  B7R82_RS09415 (B7R82_09400) gyrA 1884283..1886835 (-) 2553 WP_087449012.1 DNA gyrase subunit A -
  B7R82_RS09420 (B7R82_09405) gyrB 1886872..1888830 (-) 1959 WP_044004246.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  B7R82_RS09425 (B7R82_09410) recF 1888833..1889972 (-) 1140 WP_003705635.1 DNA replication/repair protein RecF -
  B7R82_RS09430 (B7R82_09415) yaaA 1889972..1890193 (-) 222 WP_003701414.1 S4 domain-containing protein YaaA -
  B7R82_RS09435 (B7R82_09420) - 1890670..1891959 (+) 1290 WP_087448778.1 ISL3 family transposase -
  B7R82_RS09440 (B7R82_09425) dnaN 1892122..1893261 (-) 1140 WP_044004229.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20253.82 Da        Isoelectric Point: 4.4463

>NTDB_id=226563 B7R82_RS09405 WP_003708930.1 1883182..1883733(-) (ssb) [Ligilactobacillus salivarius strain ZLS006]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQQNNSFGGNTPSNNGA
DNSADPFADNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=226563 B7R82_RS09405 WP_003708930.1 1883182..1883733(-) (ssb) [Ligilactobacillus salivarius strain ZLS006]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTTATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAGGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAACAAGGAACAAGAGTATATGTTACAGAAGTTGTAGCTGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGCAATCCATTTGGTGATTCTCAACAAAATAATAGTTTTGGTGGAAATACACCATCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.574

100

0.656
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.568

Multiple sequence alignment