Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJE_RS06050 Genome accession   NC_003912
Coordinates   1131891..1132439 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni RM1221     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1126891..1137439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJE_RS06015 (CJE1206) - 1127079..1127504 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  CJE_RS10000 (CJE1208) - 1127568..1128189 (+) 622 Protein_1168 NAD(P)H-dependent oxidoreductase -
  CJE_RS06025 (CJE1209) - 1128189..1128794 (+) 606 WP_002867183.1 NAD(P)H-dependent oxidoreductase -
  CJE_RS06030 (CJE1210) pgsA 1128920..1129456 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJE_RS06035 (CJE1211) rseP 1129453..1130559 (+) 1107 WP_002867184.1 RIP metalloprotease RseP -
  CJE_RS06040 (CJE1212) - 1130552..1131418 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  CJE_RS06045 (CJE1213) rpsF 1131505..1131882 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  CJE_RS06050 (CJE1214) ssb 1131891..1132439 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  CJE_RS06055 (CJE1215) rpsR 1132450..1132710 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJE_RS06060 (CJE1216) lon 1132770..1135145 (-) 2376 WP_002853487.1 endopeptidase La -
  CJE_RS06065 (CJE1217) - 1135162..1135809 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  CJE_RS06070 (CJE1218) fliW 1135970..1136359 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJE_RS06075 (CJE1219) proC 1136359..1137090 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  CJE_RS06080 (CJE1220) ctsT 1137087..1137389 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=22643 CJE_RS06050 WP_002860190.1 1131891..1132439(+) (ssb) [Campylobacter jejuni RM1221]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=22643 CJE_RS06050 WP_002860190.1 1131891..1132439(+) (ssb) [Campylobacter jejuni RM1221]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment