Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SPYM18_RS07465 Genome accession   NC_003485
Coordinates   1444922..1445956 (-) Length   344 a.a.
NCBI ID   WP_002983381.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS8232     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439922..1450956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM18_RS07430 (spyM18_1730) - 1440698..1441000 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  SPYM18_RS07435 (spyM18_1731) rnpM 1440993..1441289 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  SPYM18_RS07440 (spyM18_1732) nusA 1441305..1442462 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  SPYM18_RS07445 (spyM18_1733) rimP 1442637..1443173 (-) 537 WP_002983483.1 ribosome maturation factor RimP -
  SPYM18_RS07455 (spyM18_1734) trmB 1443432..1444067 (-) 636 WP_011018101.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SPYM18_RS07460 (spyM18_1735) ccrZ 1444067..1444858 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  SPYM18_RS07465 (spyM18_1736) pptB 1444922..1445956 (-) 1035 WP_002983381.1 ABC transporter permease Regulator
  SPYM18_RS07470 (spyM18_1737) pptA 1445959..1446684 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  SPYM18_RS07475 (spyM18_1738) - 1446756..1447175 (+) 420 WP_002983376.1 HIT family protein -
  SPYM18_RS07480 (spyM18_1739) - 1447172..1447528 (+) 357 WP_011018102.1 hypothetical protein -
  SPYM18_RS07485 (spyM18_1741) brpA 1447639..1448922 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  SPYM18_RS07490 (spyM18_1742) - 1448931..1449455 (-) 525 WP_002983369.1 GNAT family N-acetyltransferase -
  SPYM18_RS07495 (spyM18_1743) tsaE 1449430..1449891 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40208.44 Da        Isoelectric Point: 10.3713

>NTDB_id=22600 SPYM18_RS07465 WP_002983381.1 1444922..1445956(-) (pptB) [Streptococcus pyogenes MGAS8232]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLLIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=22600 SPYM18_RS07465 WP_002983381.1 1444922..1445956(-) (pptB) [Streptococcus pyogenes MGAS8232]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTAATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTACTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427