Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   B7941_RS04355 Genome accession   NZ_CP020805
Coordinates   837298..837735 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 832298..842735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS04330 (B7941_04330) - 833318..834454 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  B7941_RS04335 (B7941_04335) - 834469..834903 (+) 435 WP_012116767.1 RDD family protein -
  B7941_RS04340 (B7941_04340) - 834975..835298 (+) 324 WP_085341719.1 YckD family protein -
  B7941_RS04345 (B7941_04345) - 835402..836838 (+) 1437 WP_025284208.1 glycoside hydrolase family 1 protein -
  B7941_RS04350 (B7941_04350) nin/comJ 836879..837277 (-) 399 WP_085341720.1 competence protein ComJ Regulator
  B7941_RS04355 (B7941_04355) nucA/comI 837298..837735 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  B7941_RS04360 (B7941_04360) hxlB 838094..838651 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  B7941_RS04365 (B7941_04365) hxlA 838648..839283 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  B7941_RS04370 (B7941_04370) - 839515..839877 (+) 363 WP_012116770.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=225926 B7941_RS04355 WP_003156588.1 837298..837735(-) (nucA/comI) [Bacillus velezensis strain 9D-6]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=225926 B7941_RS04355 WP_003156588.1 837298..837735(-) (nucA/comI) [Bacillus velezensis strain 9D-6]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment