Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   B7941_RS04350 Genome accession   NZ_CP020805
Coordinates   836879..837277 (-) Length   132 a.a.
NCBI ID   WP_085341720.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 831879..842277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS04325 (B7941_04325) - 832051..833253 (+) 1203 WP_085341718.1 GTP-binding protein -
  B7941_RS04330 (B7941_04330) - 833318..834454 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  B7941_RS04335 (B7941_04335) - 834469..834903 (+) 435 WP_012116767.1 RDD family protein -
  B7941_RS04340 (B7941_04340) - 834975..835298 (+) 324 WP_085341719.1 YckD family protein -
  B7941_RS04345 (B7941_04345) - 835402..836838 (+) 1437 WP_025284208.1 glycoside hydrolase family 1 protein -
  B7941_RS04350 (B7941_04350) nin/comJ 836879..837277 (-) 399 WP_085341720.1 competence protein ComJ Regulator
  B7941_RS04355 (B7941_04355) nucA/comI 837298..837735 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  B7941_RS04360 (B7941_04360) hxlB 838094..838651 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  B7941_RS04365 (B7941_04365) hxlA 838648..839283 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  B7941_RS04370 (B7941_04370) - 839515..839877 (+) 363 WP_012116770.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14883.86 Da        Isoelectric Point: 4.7846

>NTDB_id=225925 B7941_RS04350 WP_085341720.1 836879..837277(-) (nin/comJ) [Bacillus velezensis strain 9D-6]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVSF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=225925 B7941_RS04350 WP_085341720.1 836879..837277(-) (nin/comJ) [Bacillus velezensis strain 9D-6]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTTCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment