Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   B7941_RS00860 Genome accession   NZ_CP020805
Coordinates   165455..165574 (+) Length   39 a.a.
NCBI ID   WP_041482476.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 160455..170574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS20105 - 160806..161317 (+) 512 Protein_165 bacteriocin biosynthesis protein AlbG -
  B7941_RS00840 (B7941_00840) - 161324..162700 (-) 1377 WP_046702210.1 YncE family protein -
  B7941_RS00845 (B7941_00845) - 162740..164095 (-) 1356 WP_085341581.1 YncE family protein -
  B7941_RS00855 (B7941_00855) rapF 164326..165471 (+) 1146 WP_020957973.1 tetratricopeptide repeat protein Regulator
  B7941_RS00860 (B7941_00860) phrF 165455..165574 (+) 120 WP_041482476.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  B7941_RS00865 (B7941_00865) - 165772..165975 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  B7941_RS00870 (B7941_00870) - 165989..166192 (+) 204 WP_007407641.1 hypothetical protein -
  B7941_RS00875 (B7941_00875) - 166227..166412 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  B7941_RS00880 (B7941_00880) - 166598..166879 (+) 282 WP_007407643.1 hypothetical protein -
  B7941_RS00885 (B7941_00885) - 166923..167435 (+) 513 WP_007407644.1 stage II sporulation protein M -
  B7941_RS00895 (B7941_00895) - 168026..168244 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  B7941_RS00900 (B7941_00900) speB 168412..169284 (-) 873 WP_020957975.1 agmatinase -
  B7941_RS00905 (B7941_00905) speE 169343..170173 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4267.13 Da        Isoelectric Point: 10.0233

>NTDB_id=225915 B7941_RS00860 WP_041482476.1 165455..165574(+) (phrF) [Bacillus velezensis strain 9D-6]
MKLKYKLALTCLAVSTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=225915 B7941_RS00860 WP_041482476.1 165455..165574(+) (phrF) [Bacillus velezensis strain 9D-6]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment