Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SE_RS08255 | Genome accession | NC_004461 |
| Coordinates | 1750312..1750707 (-) | Length | 131 a.a. |
| NCBI ID | WP_002457121.1 | Uniprot ID | A0A7H5C5S7 |
| Organism | Staphylococcus epidermidis ATCC 12228 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1745312..1755707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE_RS08230 (SE1690) | thiE | 1746053..1746691 (-) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
| SE_RS08235 (SE1691) | thiM | 1746697..1747485 (-) | 789 | WP_002469583.1 | hydroxyethylthiazole kinase | - |
| SE_RS08240 (SE1692) | thiD | 1747478..1748299 (-) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| SE_RS08245 (SE1693) | tenA | 1748292..1748981 (-) | 690 | WP_001829894.1 | thiaminase II | - |
| SE_RS08250 (SE1694) | - | 1749265..1749924 (-) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| SE_RS08255 (SE1695) | ssb | 1750312..1750707 (-) | 396 | WP_002457121.1 | single-stranded DNA-binding protein | Machinery gene |
| SE_RS08260 (SE1696) | - | 1750898..1751338 (+) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| SE_RS08265 (SE1697) | fabZ | 1751656..1752093 (-) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| SE_RS08270 (SE1698) | murA | 1752127..1753392 (-) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| SE_RS08275 | - | 1753502..1753735 (-) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| SE_RS08280 (SE1699) | - | 1753884..1754288 (-) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15159.02 Da Isoelectric Point: 5.2661
>NTDB_id=22590 SE_RS08255 WP_002457121.1 1750312..1750707(-) (ssb) [Staphylococcus epidermidis ATCC 12228]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=22590 SE_RS08255 WP_002457121.1 1750312..1750707(-) (ssb) [Staphylococcus epidermidis ATCC 12228]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |