Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B5P37_RS10395 Genome accession   NZ_CP020773
Coordinates   2232465..2233334 (+) Length   289 a.a.
NCBI ID   WP_085238143.1    Uniprot ID   A0AAC9WMV9
Organism   Staphylococcus lutrae strain ATCC 700373     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2227465..2238334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5P37_RS10370 (B5P37_10370) ylqF 2227794..2228657 (+) 864 WP_085238138.1 ribosome biogenesis GTPase YlqF -
  B5P37_RS10375 (B5P37_10375) - 2228658..2229449 (+) 792 WP_085238139.1 ribonuclease HII -
  B5P37_RS10380 (B5P37_10380) - 2229578..2229847 (+) 270 WP_085238140.1 hypothetical protein -
  B5P37_RS10385 (B5P37_10385) sucC 2230062..2231228 (+) 1167 WP_085238141.1 ADP-forming succinate--CoA ligase subunit beta -
  B5P37_RS10390 (B5P37_10390) sucD 2231250..2232155 (+) 906 WP_085238142.1 succinate--CoA ligase subunit alpha -
  B5P37_RS10395 (B5P37_10395) dprA 2232465..2233334 (+) 870 WP_085238143.1 DNA-processing protein DprA Machinery gene
  B5P37_RS10400 (B5P37_10400) topA 2233439..2235508 (+) 2070 WP_085238144.1 type I DNA topoisomerase -
  B5P37_RS10405 (B5P37_10405) trmFO 2235535..2236839 (+) 1305 WP_085238145.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B5P37_RS10410 (B5P37_10410) xerC 2236958..2237848 (+) 891 WP_085238146.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33010.29 Da        Isoelectric Point: 8.9610

>NTDB_id=225837 B5P37_RS10395 WP_085238143.1 2232465..2233334(+) (dprA) [Staphylococcus lutrae strain ATCC 700373]
MLKHYLLLLIYAGFTTQQIHRFYPRLLDLTEKKVSLVQILTEIATVFPRATIRHKLQRLQTLDIQWIASTLQEHQIIPVT
INDPHYPSLLKEIYDPPFVLFCKGQLDLLQHSCRCLAIVGARQHTDYTPQVLETLFQSFKHHPLVIVSGLANGTDAIAHQ
QALQQHLPTIGVLGFGHFHHYPSKTSHLRQMIESTHLTISEYPPHTPIAKFRFPERNRIISGLSKGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDFFNLHTRGNMLRVKEGAEIVLSAQDILKDYV

Nucleotide


Download         Length: 870 bp        

>NTDB_id=225837 B5P37_RS10395 WP_085238143.1 2232465..2233334(+) (dprA) [Staphylococcus lutrae strain ATCC 700373]
ATGTTAAAACATTATTTACTCTTACTCATTTATGCAGGTTTTACGACACAACAAATTCATAGATTTTATCCACGTTTACT
TGATTTAACAGAAAAAAAGGTCTCATTAGTTCAGATTTTAACTGAAATAGCCACAGTATTTCCAAGAGCGACCATTCGAC
ATAAATTGCAACGACTACAAACACTGGATATTCAATGGATTGCATCCACTTTACAGGAACATCAGATTATCCCCGTGACG
ATAAATGACCCTCATTATCCTTCGTTATTAAAAGAAATTTATGATCCCCCGTTCGTCTTATTTTGTAAAGGTCAGCTTGA
TTTATTACAGCATTCTTGCAGATGCCTCGCAATTGTCGGTGCACGGCAGCATACAGATTATACCCCGCAAGTATTAGAAA
CACTATTCCAATCATTTAAACATCACCCACTTGTCATTGTTTCAGGCTTGGCTAATGGTACAGATGCAATTGCGCATCAG
CAGGCGTTGCAACAGCACTTACCGACGATTGGTGTGCTCGGTTTTGGTCATTTTCATCATTATCCTTCAAAAACTTCTCA
TCTAAGGCAAATGATTGAGTCTACACATCTCACGATTAGTGAATATCCACCACACACGCCCATCGCAAAATTTAGATTTC
CAGAGAGAAATAGAATTATTAGTGGATTATCAAAAGGGGTATTAGTGACGGAAGCAAAAGAACGCAGTGGGGCATTGATT
ACATTAGATCAGGCATTAGAACAAAATCGTAACGTTTATGTATTGCCTGGAGATTTTTTTAATTTGCATACAAGAGGGAA
CATGTTACGTGTGAAAGAAGGCGCGGAGATTGTTTTATCGGCACAAGATATTTTGAAAGATTACGTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

53.265

100

0.536
  dprA Staphylococcus aureus MW2

53.265

100

0.536

Multiple sequence alignment