Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B7474_RS11775 Genome accession   NZ_CP020714
Coordinates   2253900..2254295 (-) Length   131 a.a.
NCBI ID   WP_101766688.1    Uniprot ID   -
Organism   Staphylococcus aureus strain K18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2248900..2259295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7474_RS11745 (B7474_11790) thiE 2249363..2250004 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  B7474_RS11750 (B7474_11795) thiM 2249997..2250797 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  B7474_RS11755 (B7474_11800) thiD 2250781..2251611 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  B7474_RS11760 (B7474_11805) tenA 2251604..2252293 (-) 690 WP_101766689.1 thiaminase II -
  B7474_RS11770 (B7474_11815) sceD 2252817..2253512 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  B7474_RS11775 (B7474_11820) ssb 2253900..2254295 (-) 396 WP_101766688.1 single-stranded DNA-binding protein Machinery gene
  B7474_RS11780 (B7474_11825) - 2254489..2254929 (+) 441 WP_000846746.1 YwpF-like family protein -
  B7474_RS11785 (B7474_11830) fabZ 2254988..2255428 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  B7474_RS11790 (B7474_11835) murA 2255462..2256727 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  B7474_RS11795 (B7474_11840) - 2256838..2257071 (-) 234 WP_000384523.1 DUF1146 family protein -
  B7474_RS11800 (B7474_11845) - 2257203..2257295 (-) 93 WP_001790611.1 hypothetical protein -
  B7474_RS11805 (B7474_11850) - 2257633..2258037 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15028.07 Da        Isoelectric Point: 5.6771

>NTDB_id=225511 B7474_RS11775 WP_101766688.1 2253900..2254295(-) (ssb) [Staphylococcus aureus strain K18]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNDILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=225511 B7474_RS11775 WP_101766688.1 2253900..2254295(-) (ssb) [Staphylococcus aureus strain K18]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGACATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment