Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   B7474_RS04185 Genome accession   NZ_CP020714
Coordinates   827798..828784 (-) Length   328 a.a.
NCBI ID   WP_101766634.1    Uniprot ID   -
Organism   Staphylococcus aureus strain K18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822798..833784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7474_RS04160 (B7474_04145) - 823058..823405 (-) 348 WP_001242102.1 hypothetical protein -
  B7474_RS04165 (B7474_04150) - 823591..824184 (+) 594 WP_000224611.1 CYTH domain-containing protein -
  B7474_RS04170 (B7474_04155) - 824288..824653 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  B7474_RS04175 (B7474_04160) yjbH 824676..825482 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  B7474_RS04180 (B7474_04165) pepF 825942..827750 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  B7474_RS04185 (B7474_04170) coiA 827798..828784 (-) 987 WP_101766634.1 competence protein CoiA Machinery gene
  B7474_RS04190 (B7474_04175) mecA 828905..829624 (-) 720 WP_001217723.1 adaptor protein MecA -
  B7474_RS04195 (B7474_04180) spxA 829995..830390 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  B7474_RS04200 (B7474_04185) trpS 830685..831674 (+) 990 WP_000448943.1 tryptophan--tRNA ligase -
  B7474_RS04205 (B7474_04190) opp4C 831716..832596 (-) 881 Protein_804 oligopeptide ABC transporter permease -
  B7474_RS04210 (B7474_04195) opp4B 832608..833570 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.51 Da        Isoelectric Point: 9.7132

>NTDB_id=225496 B7474_RS04185 WP_101766634.1 827798..828784(-) (coiA) [Staphylococcus aureus strain K18]
MLVALNEEQERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=225496 B7474_RS04185 WP_101766634.1 827798..828784(-) (coiA) [Staphylococcus aureus strain K18]
ATGTTAGTAGCTTTAAATGAAGAACAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.256

100

0.973

Multiple sequence alignment