Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VV1_RS07740 Genome accession   NC_004459
Coordinates   1604009..1604626 (-) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus CMCP6     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599009..1609626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS07730 (VV1_1631) aceF 1600282..1602192 (+) 1911 WP_011079556.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  VV1_RS07735 (VV1_1632) lpdA 1602450..1603877 (+) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  VV1_RS07740 (VV1_1634) opaR 1604009..1604626 (-) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  VV1_RS07745 (VV1_1636) hpt 1605018..1605548 (+) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  VV1_RS07750 (VV1_1637) can 1605648..1606316 (-) 669 WP_011079560.1 carbonate dehydratase -
  VV1_RS07755 (VV1_1638) - 1606558..1608228 (+) 1671 WP_011079561.1 SulP family inorganic anion transporter -
  VV1_RS07760 (VV1_1640) - 1608395..1609318 (+) 924 WP_011079562.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=22544 VV1_RS07740 WP_011079558.1 1604009..1604626(-) (opaR) [Vibrio vulnificus CMCP6]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=22544 VV1_RS07740 WP_011079558.1 1604009..1604626(-) (opaR) [Vibrio vulnificus CMCP6]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGTGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAACCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCGACGCGTGATGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GTACTAATCAATTACTGGTACAAAACATGTTCATCAAAGCCATTGAGCGTGGTGAAGTGTGTGACCAACACAACCCAGAA
GATTTGGCGAACTTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGTACCAACAATACCGCAGAGCTCAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAGCACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707

Multiple sequence alignment