Detailed information NTG0022537

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VV1_RS07515
• Genome accession: NC_004459
• Coordinates: 1559435..1560427 (+)
• Length: 330 a.a.
• NCBI ID: WP_011079521.1
• Uniprot ID: A0A3Q0L3U7
• Organism: Vibrio vulnificus CMCP6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1554435..1565427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV1_RS07480 (VV1_1581)	ftsB	1554466..1554747 (+)	282	WP_011079514.1	cell division protein FtsB	-
VV1_RS07485 (VV1_1582)	ispD	1554747..1555460 (+)	714	WP_011079515.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VV1_RS07490 (VV1_1583)	ispF	1555457..1555933 (+)	477	WP_011079516.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VV1_RS07495 (VV1_1584)	truD	1555969..1557012 (+)	1044	WP_011079517.1	tRNA pseudouridine(13) synthase TruD	-
VV1_RS07500 (VV1_1585)	surE	1557018..1557785 (+)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
VV1_RS07505 (VV1_1586)	-	1557788..1558414 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VV1_RS07510 (VV1_1587)	-	1558458..1559354 (+)	897	WP_011079520.1	peptidoglycan DD-metalloendopeptidase family protein	-
VV1_RS07515 (VV1_1588)	rpoS	1559435..1560427 (+)	993	WP_011079521.1	RNA polymerase sigma factor RpoS	Regulator
VV1_RS07520 (VV1_1589)	mutS	1560503..1563064 (-)	2562	WP_011079522.1	DNA mismatch repair protein MutS	-
VV1_RS07525 (VV1_1590)	pncC	1563148..1563651 (+)	504	WP_011079523.1	nicotinamide-nucleotide amidase	-
VV1_RS07530 (VV1_1591)	recA	1563785..1564834 (+)	1050	WP_011079524.1	recombinase RecA	Machinery gene
VV1_RS07535 (VV1_1592)	recX	1564938..1565399 (+)	462	WP_011079525.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38054.13 Da
• Isoelectric Point: 4.5114

>NTDB_id=22537 VV1_RS07515 WP_011079521.1 1559435..1560427(+) (rpoS) [Vibrio vulnificus CMCP6]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVKLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=22537 VV1_RS07515 WP_011079521.1 1559435..1560427(+) (rpoS) [Vibrio vulnificus CMCP6]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCAAACTTCGCGAGGAGTTTGATGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTGGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCAGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAAGTTGGGCAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: A0A3Q0L3U7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836